Amborella trichopoda: 18424220
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Entry
18424220 CDS
T02990
Name
(RefSeq) heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
atr
Amborella trichopoda
Pathway
atr00900
Terpenoid backbone biosynthesis
atr01100
Metabolic pathways
atr01110
Biosynthesis of secondary metabolites
Module
atr_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
18424220
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
atr01006
]
18424220
Enzymes [BR:
atr01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
18424220
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
18424220
2.5.1.29 geranylgeranyl diphosphate synthase
18424220
Prenyltransferases [BR:
atr01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
18424220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
18424220
NCBI-ProteinID:
XP_006828874
UniProt:
W1NM36
LinkDB
All DBs
Position
Unknown
AA seq
369 aa
AA seq
DB search
MASNPTLNTSIHPSLSSASRKPNPLSFHPHLHLSTTPRKTLFAQSSAAPSLSSPTFDLKT
YWKSLISEIDVQLDAAVPLRFPSVIHEAMRHTVLSPGAKRASPILCIATCELFGAPRSLA
LPTACALEMIHAASLIHDDLPCMDDAPARRGRPSNHAAFGMDMAILAGDALFPLAFAHIT
NAYCADQNHNTTLSYTSVLRLVTEIASTVGARGMVEGQFLDLHSTALGALGGVAGDYFET
DIMKGRELVERIVEKKFGVMAECSAVCGAIVGGANEEEMEHLRRYGRAVGVLYQVVDDIK
EVRGGKNEEGGEKKRSRASYARAYGVQGAMQLAEGLREQAKRELQGFHGAGVLPLYSFVD
YAINRDFEI
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaaccccaccctcaacacctccatccacccctccctctcctccgcctccaga
aaacccaaccccctttctttccacccccaccttcacctctccaccacccctcgaaagacc
ctcttcgctcaatcctccgcagccccatctctctcctcccccaccttcgacctcaagacc
tactggaaatcactcatctctgagatcgatgtccagctcgatgctgccgtccccctgcgc
ttcccttcagtaatccatgaggccatgcgccacaccgtgctctcgcccggggccaagcga
gcatcccccatcctctgcattgccacatgcgagctctttggcgccccgcgctccctagcc
ctccccactgcgtgcgccctcgagatgatccatgcggcgtccctcatccatgacgatctc
ccctgcatggacgacgcccctgcccgccgcggccgcccgtccaaccatgccgccttcggc
atggacatggccatccttgctggtgacgccctcttccccctcgccttcgcccacatcacc
aacgcatactgcgccgatcagaatcacaacaccaccctttcatacacctcggtgcttcgg
ctggtgacagagatcgccagcaccgtaggggctcgcgggatggtcgagggacagttcctg
gacctgcacagcaccgcgctcggggccctcgggggagtggcaggagattattttgagact
gatatcatgaagggtcgagagctggtggagaggattgtcgagaagaaattcggggtgatg
gcggagtgctcggcggtttgtggcgcaatcgtgggcggggccaatgaggaagaaatggaa
catttgaggaggtatgggagagcggtgggggttttgtaccaggtggtggatgatataaag
gaagtgagaggagggaaaaatgaggagggtggagagaagaagaggagcagggcgagttat
gcgagggcttacggggttcagggggcgatgcaattggcggagggtttgagagagcaggcg
aagagagagctgcaggggtttcatggagctggggttttgcctctctacagctttgtggat
tacgccattaacagggacttcgagatctga
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