KEGG   Amborella trichopoda: 18425754
Entry
18425754          CDS       T02990                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 5B
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
atr  Amborella trichopoda
Pathway
atr03020  RNA polymerase
atr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    18425754
  09124 Replication and repair
   03420 Nucleotide excision repair
    18425754
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atr03021]
    18425754
   03400 DNA repair and recombination proteins [BR:atr03400]
    18425754
Transcription machinery [BR:atr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     18425754
  RNA polymerase III system
   RNA polymerase III
     18425754
  RNA polymerase I system
   RNA polymerase I
     18425754
DNA repair and recombination proteins [BR:atr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      18425754
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mab-21
Other DBs
NCBI-GeneID: 18425754
NCBI-ProteinID: XP_006830353
UniProt: W1NSF3
LinkDB
Position
Unknown
AA seq 216 aa
MAAENCLCKLLDRGSVESHRLFRARKTVFEMLRDRGYSVSDNDLSMTLPHFRELYGEEPD
TSQLTITTAMDRDPSQRIMVLFCAVDAAKLAHMREYIKQILNEKVHDAIIVYRNSMTPQA
RIAIKEMPSPYSVELFQMSDLLVNITEHVLKPKHDILTPEEKDELLKKYSVTDNQLPRML
QTDAISRYYGLKPGQIVKITYSDEPIESFMTYRCVN
NT seq 651 nt   +upstreamnt  +downstreamnt
atggctgcagagaactgcctgtgcaagctcttggacagagggagcgtggaaagccataga
ttgtttcgcgcgagaaaaacagtgttcgagatgctcagagacagaggttatagtgtctca
gataatgatctctcaatgactttgccccattttagagagctttatggcgaggagcctgat
accagccagcttactatcaccaccgccatggatagagacccttctcagaggataatggtg
ctattttgtgcagttgatgcagcgaaacttgcacatatgcgtgaatatataaaacagatc
ctcaacgaaaaagtacatgatgcgataattgtttaccgaaattctatgacgcctcaagct
cgaattgccattaaagaaatgccatctccatattctgttgagttatttcaaatgtcagat
ttgttggttaacataactgaacatgttttgaagccaaaacatgacatattgacaccagaa
gagaaagatgagcttttgaagaaatacagcgtgacagacaatcagcttccccgtatgctt
cagacagatgccatttctcgctactatggccttaagccgggtcaaattgtgaaaataact
tacagtgatgagcccattgagtccttcatgacataccgttgtgtgaactga

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