KEGG   Amyelois transitella (navel orangeworm): 106135615
Entry
106135615         CDS       T09957                                 
Name
(RefSeq) uncharacterized protein LOC106135615
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03020  RNA polymerase
atra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106135615
  09124 Replication and repair
   03420 Nucleotide excision repair
    106135615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atra03021]
    106135615
   03400 DNA repair and recombination proteins [BR:atra03400]
    106135615
Enzymes [BR:atra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     106135615
Transcription machinery [BR:atra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     106135615
DNA repair and recombination proteins [BR:atra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      106135615
Motif
Pfam: PAN_1 PAN_4 PAN_2
Other DBs
NCBI-GeneID: 106135615
NCBI-ProteinID: XP_060808754
EnsemblRapid: LOC106129481 LOC106135615
LinkDB
Position
29:join(2199473..2199581,2201661..2201793,2202187..2204453,2215150..2215288,2219002..2219315,2220228..2220584,2221215..2221353,2221991..2222142,2223180..2223318,2224138..2224319,2225004..2225139,2226662..2226826,2227765..2227859,2228217..2228783,2230089..2230205,2230524..2230590,2231901..2232007,2232970..2233125,2234066..2234204,2234835..2235960)
AA seq 2201 aa
MDGLLIKMLSVLVLCPVLLAAVQTLTIDSQLGTSIEDCFERISIGEQLPDDAIYRNVSEL
TTRECEQICKQDKQCQTYDYGVGAKGNATCNLSNLEEKELKEKGLLKRHPDYDVYVRRFQ
CEQSPPTPIQAQFDDPGEGPHHRPVFRPDDDEPKRPLADEFLTSDIRPYSSNRPPYNHLD
ERPDDYTNSKPHYDRPPSYGDHKPQDIPYRPIKKPDQYDVLQFQEQYQPNRPYENLRPDP
HYPPRPDDDIPDLYGQRPRPEFINQYRPEKPNYHYIIRPNRKPRPPDDGYGTKPLRPQDY
PTRPDPYGQNDIGHPPGPIGPPHVPYRPTRPDYHPTRPNDHPSYSYNTQYASSYGQNNQD
NSIYLEIYDPPRPYKPLKPDYGPIQGTYGQNYGYGSSHTQNSYSHLQSQSNYYGTGSITD
ITNYDPYRPQDPGYKPHKPVYDPKPGYGNHIPNDDIYRPGYGNKPSYGIQKPNDQKPTYG
SGQGSYSSSEASYGSHQGSYGSNQAAYGNGQATYGSSQGSYTSSQGSYASNQGSYSDSQI
NRPYPTQDSQGYGNPTTRKPVDNNYKPINDKPSYSHGSDYSNHDNSYGSGGSYGSKPTYS
SSPFYGSNKPSYDKPPSDSYNSNKPSFDSGSSYGSNKPSFDSGSSSYGGHKPSFDSSSSY
GGNKPIYDSNSYGNRPFDVGYGISNSQYGSKPNFDSSSHYGNRPSHNRPQGSYGNKPYQE
NFSHYGSSQSHSQYDSQYQSFGHYGIPDHSNRPDSPYNDEKPDDTPSYQGVEDAKNSNKS
RPNQRPNIKPVYEYELEKPVNVPSYIVRPGGDIITSRPVTIGDYGIREFGRPVSYKACFR
RVLAGRRALRSFVRKVVNCERLEDCRRECAEERRFPCESFNYRLDPSFRGKGLCELMTKP
IEAFDIQRDFVDDKDYDFYEIDRNSLEPYCPESLRGPGFLHSGYLSSKPNKGWDRRDWVG
SRYNEYDRFYDRRGNRGGYDTFIPYQIGTGLARSNDNQENWGKYGGYYGGYNEYYKDRSD
YFKSLNHWRLTDDHRHNGVKLVENTNFDYNDLYKNRPYDNHRYGYGSWKRGRWNSSGINW
NSLDYESYSKKPQNSYYDDRGEEGGKDCSSRRRPGMSLGSGAIRRSLIARNVVECEAACF
EEREFKCVSYSYRYSSSRGTDNCFLSERPYRGLELSADSGSDVYAMPQDQGCSTISHKPW
VESECFWHVRSGAAVSGSVVRAALTVAGLGACEAECIRAQGFFCRGFSFRFDSPTIGDDL
ENCILTSSPPTSLEVNRGLRPTAGHELYSRGNYGRGCEPALYDDTQLKETQCYLQYDSAA
RLKTASVRGQARVTSEGACGQACADAPFRCLSFSFTSNAPPGADNCLLSEVRLFDLQRGV
DYEHSADDWLFAFDLFNGQCWRKIHGNSDYDNPSHELPRPLPSEERYPVTGSGSPGYLPT
AGETPYIPASGPPSGPGYKPGYPGPEPPQPYPEPGGPSFKPNYPEPSGPATYGPGYPEPS
GPGYKPGYLPKPGPKPVYRPDYPESGFRPGYRPDPDRPDYGPSYRPDISGPGYPNKPGYS
EPSGPGYIPQPPSGSGYKPTYPDSGFKPGYPPPEPPGSKPGYLPEPRPEYGPPKPRPGVP
GYPGDREEGGPISVSWRHYTVSGLPCRAGGACARNHVAGHWACEPEGGEVGSWDYCCSPT
HRCGYSEGFHKPWCYVGPNEDQWRPCSDKYYPYHQHNVPHPSQAHGPKENQPYPSRWERP
YSDRNRPPGPYLSESDRRYWDELYKNGPQAYYDKFGNPLPGYTRVPMSSPPYIKYRHRYP
PPPSGQWVPVTDQELEPPVPVGLGVPRYWPVAYLHKGPPPNMTYFRYNETQPTTTERYNP
RPEINQNNPQRDVPPPPPPPVVRTTEKPDLKLEGRSQRDERTKDFDEKPKPDIFQLNNEK
VTTTITPKVEIKKEDPKPELKEEDVTKTNNSIVETVKTDTKVEKESENIKGIDDKLDDFS
SIEILNIEDATKGDKKSDLKTLEAEERQIEAIGRLLASRRGSKLILEKRSQKDLEAKSIA
VDKDTVDFNFGNKFPTTERRGIIQKVTKDEIQREKNIDKSLEVSETTFVRPPRVLSTTEN
IRKAIVNGKVFYDATIREQRDIFSNSTRKPKNFRHLDDARAPSVITNSTFGKKKIIQPRN
VNPVRRVRRVYRKRYNPNEVRRRLLERERSSKPEIETARRV
NT seq 6606 nt   +upstreamnt  +downstreamnt
atggacggattgttaataaaaatgttgagtgtattagttttgtgcccggttttgcttgca
gccgtgcagactttgactattgattcacagttgggcacgtctattgaagattgtttcgag
agaatatcaattggagaacaattgccagacgacgccatctatcgcaacgtgtcggaacta
actacaagagagtgcgagcaaatctgtaagcaggataagcagtgtcaaacctatgattat
ggggttggggcaaaaggcaacgcaacatgtaatttaagcaaccttgaggagaaagaattg
aaagagaaaggtcttcttaaacgacacccagactatgacgtgtacgtcagaagattccaa
tgtgagcagtctccacccacacccattcaggcacaatttgatgatcctggtgaaggacca
catcatagaccagtatttagacctgatgacgatgaaccaaagcgtccattagctgatgag
tttctaaccagtgacataagaccttattcgagcaatagaccaccctacaaccacttagat
gagagaccagatgattatacaaattcaaagcctcattacgatagaccacccagttatgga
gatcataaaccacaagatattccctatagacctattaagaaacctgatcaatatgatgtg
ttgcagtttcaagaacaatatcaacctaatagaccttatgaaaatttaagaccagacccc
cattacccgcctcgaccagacgacgatattcctgatttgtatggtcaaagacctaggcca
gaatttataaaccaatacagaccagaaaagccgaattatcactacattattagacctaac
agaaaaccaagaccgccagatgatggttatgggacaaaacctttgaggcctcaagattac
cctactagacctgatccttacggtcaaaatgatattggtcatccaccaggtccaattggg
cctccacatgtaccgtatagacctaccagaccagattaccatccaacgcgacccaacgat
catccaagctattcttacaacactcaatatgctagtagctatggacaaaataatcaagac
aattcaatttatttagaaatttatgatccacctagaccttacaaaccattaaagccggat
tatggtcctatacaaggtacttatggccaaaattatggttatggcagcagccatactcaa
aactcttattcgcatttacaaagtcagtcaaattattacgggactggcagcataacagat
attacaaattacgatccttatagacctcaagatccaggttacaagcctcataaaccagtt
tatgatcctaaacctgggtatggtaatcatatacctaatgatgatatttatagacccggc
tatgggaataaaccaagttatggtatacaaaagcccaatgatcagaaacctacgtatggc
agcggccagggatcgtattctagtagtgaagcgtcatacggtagtcaccaaggatcctac
gggtctaaccaagctgcatacggtaatggtcaagcaacttatggatcaagccaagggtca
tacactagtagtcaaggatcttacgcttctaaccaaggctcttatagtgattctcagatt
aataggccttatccaacacaagattcacaaggttatggtaatccaacaacgcgtaaacct
gttgacaataattataagccaattaatgataaaccttcatacagtcatggaagtgattat
agtaatcatgataacagttacggttctggtggatcttacggaagtaaaccaacttatagt
agtagtccgttttatggaagcaataagccaagctatgataaacctccaagtgattcctat
aatagcaataagccatcttttgatagcggtagctcttacggcagtaacaaaccttcattt
gacagcggcagtagttcttacggaggacataagccatcttttgatagcagcagttcttac
ggtggtaacaagccaatttacgatagcaattcttacggcaatagaccttttgatgttggt
tacggaatatctaacagccaatatggatctaaaccaaacttcgatagttcaagccactat
ggaaatcgtccatctcataatagaccccaaggttcttacggtaataagccttatcaagag
aattttagtcactacggaagcagccaatcacatagtcaatatgacagtcagtaccaatca
tttggtcattatggaatacctgatcattccaatagaccagacagcccttacaatgatgaa
aaacctgatgatacaccatcatatcaaggtgtggaagatgcaaagaatagcaacaaatca
agacctaatcagaggcctaatataaaacctgtttatgagtatgaactggagaaaccagtg
aatgtgccaagttatatagtgcggcctggtggtgacatcatcacgtcgagacctgtgacc
ataggcgactacgggatacgggaatttggcagacctgtttcttataaagcttgcttccgt
cgcgtgctcgccggccgccgagcgctccgcagcttcgtacgaaaagtcgtcaactgtgaa
cgactggaagactgtcggagggaatgcgctgaggagaggaggttcccctgcgagagcttc
aactacagactggacccgtcattccgcggcaagggcttatgcgagctgatgacgaaacct
atcgaggcttttgacatccaacgagacttcgtcgacgacaaagactacgacttttacgaa
atagacagaaacagtttagagccttactgtcctgagtctctcagaggcccggggttcttg
cattctggttatttatcatcaaaacctaataagggctgggacagaagggactgggtaggc
agtaggtacaatgagtacgataggttttatgataggagaggcaatagaggtggatatgac
acgtttataccttatcagattggtacaggcttagcacgaagcaatgataaccaagagaat
tggggcaaatatggcggttactatggaggttacaacgaatattacaaagacagaagcgac
tatttcaaatcattaaatcattggagattgaccgacgatcatcgacataacggggttaaa
cttgtggaaaacaccaactttgattacaacgatttgtataaaaaccgcccgtatgataac
catagatacggttatggatcctggaagagggggaggtggaatagctctggaatcaattgg
aatagtctggattatgagagttatagtaagaagcctcagaatagttattatgatgatcgc
ggtgaggaaggaggcaaagattgctcctcccgacgcagaccagggatgtccctcgggtct
ggtgccatcagaaggtccctgatagcaaggaacgtggtagaatgtgaagcagcctgcttt
gaggagagggagttcaagtgtgtctcgtacagttacagatactcaagttcccgcggcaca
gacaactgcttcctcagcgagcgaccttaccgaggcctggagttgtcagctgatagtggg
tctgatgtgtacgcgatgccccaagaccagggctgctctactatcagccataaaccttgg
gtggagagcgaatgtttttggcacgttcgttctggtgccgctgtgagtggctccgtggtg
agggccgctctgactgtggcggggctcggcgcttgcgaggcagaatgcatcagggcacag
ggcttcttctgcagagggttcagttttagatttgactccccaacgatcggtgatgacctt
gagaactgtatcctgacatcatccccgcccacgtccctggaggtgaaccgtgggctgcgg
cccactgctggacacgagctgtattcccgcgggaactatgggagagggtgtgagccggcg
ttgtatgatgacactcaacttaaagagactcaatgctacctccaatacgacagcgctgct
cgtctgaagaccgcatcggtgcgcggtcaggcgcgggtcacgagcgagggggcgtgcggt
caagcgtgcgccgacgcacctttccggtgtctcagcttctcttttacgagcaacgccccc
cctggcgctgataactgcctgctatcagaggtcaggctgttcgaccttcagcggggagtg
gactacgagcactccgctgacgactggttgttcgccttcgacctcttcaacggccagtgc
tggaggaagatccacgggaactctgattacgacaatccatcccatgagctcccaagacct
ctgccatcagaagaacgctatcctgtcaccggttcgggatcaccaggatacttgcccacg
gctggagaaactccgtacataccagcatctggacccccaagcggtcccgggtataaaccc
ggctacccggggccggaaccgccgcagccttacccagaaccgggcggtccaagcttcaaa
cccaactaccctgaaccttccggtccggcgacatatggacccggttatccggaaccaagc
ggacccggttataaacctgggtacttacccaaacccggtccaaaaccggtgtatagaccg
gattatccggaatccggttttagacccggatatagaccggacccggacagaccggattat
ggacccagctatcgacctgatatatccggacctgggtatccaaacaaacccgggtattca
gaaccgagcggacccggttatatacctcaaccccccagcggctctggttataaacctact
tacccggattcgggcttcaaacccggatatccgcctccagagccgcctggtagtaaaccc
gggtatttgccggaaccaagacccgagtatggtccgccaaaaccgagaccgggtgtacca
ggttacccgggtgacagagaagaaggtggaccaatatcagtgtcctggcgccactacacg
gtgtcggggctgccgtgccgcgcgggcggcgcgtgcgcgcgcaaccacgtcgccggccac
tgggcgtgcgagcccgaggggggggaagtgggttcttgggattactgctgctcaccgaca
cacagatgcgggtacagcgaaggtttccacaagccatggtgctacgtaggaccaaacgag
gatcaatggcggccgtgtagtgacaagtattacccttaccaccaacacaatgtgcctcat
ccgtcgcaggcgcacgggccaaaagaaaatcagccgtacccgagccgctgggagcgtccc
tacagcgacaggaaccggcccccaggaccatatttatctgagagcgaccgcagatattgg
gacgagttgtacaagaatggacctcaagcgtattatgataagtttggaaatcctctgccg
ggatacacccgcgtcccgatgtcaagccccccctacatcaagtaccgacacaggtaccct
ccccctccgagtggacaatgggttcctgtcactgatcaggagctggagccacccgtgcct
gttggattgggagtgccaagatattggccagtcgcgtatttacataaaggtcctccacct
aacatgacttacttcagatataatgaaacccaacccacgaccactgaaaggtacaatccc
cggccagaaatcaatcagaataacccccaaagagatgtaccaccacccccaccaccacca
gttgtaagaactactgaaaaacctgatttgaaattagagggcagaagtcaaagagacgaa
cgaaccaaagatttcgatgagaaacctaaacctgacatattccaattgaataatgaaaaa
gttacaacaactattactcccaaagttgaaattaaaaaagaagatcctaagccagaattg
aaagaggaggatgttacaaaaacaaacaattctatcgtggaaactgttaaaactgatacg
aaagttgagaaagaaagtgaaaatattaaaggtatagatgataagttagatgacttttct
tctattgaaattttaaatatagaagatgcgacaaaaggagataaaaaatctgatttaaag
actcttgaggcagaagagagacagatagaggctattggaagattattggcatcgcgtcgt
ggatccaaacttatattagagaagcgttctcaaaaagatttggaagccaaaagcattgca
gttgataaagatacagttgattttaatttcggcaacaaattccctacaacagagaggagg
ggtattatccaaaaagtgactaaggatgaaatacagagggagaaaaatatagacaaaagt
ttagaagtgagtgagacaacattcgttcggcctccaagagttttgagtactacagaaaat
ataaggaaggctattgttaatgggaaggtgttttatgatgcaacgatcagggaacaacgc
gatattttctctaattccacgagaaaacctaaaaattttaggcatttggacgacgcaaga
gcgccttcggttataactaacagcacttttgggaagaagaagattatacaaccaagaaat
gtgaatcctgtgaggagagtacgtagggtttacagaaagaggtataaccctaacgaagtg
aggagacggctgttagaaagagagagaagctcgaaaccggagatagaaactgccaggaga
gtttaa

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