KEGG   Amyelois transitella (navel orangeworm): 106139260
Entry
106139260         CDS       T09957                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit Rpb4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03020  RNA polymerase
atra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106139260
  09124 Replication and repair
   03420 Nucleotide excision repair
    106139260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atra03021]
    106139260
   03400 DNA repair and recombination proteins [BR:atra03400]
    106139260
Transcription machinery [BR:atra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     106139260
DNA repair and recombination proteins [BR:atra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      106139260
Motif
Pfam: RNA_pol_Rpb4 Tfb4
Other DBs
NCBI-GeneID: 106139260
NCBI-ProteinID: XP_013196121
EnsemblRapid: LOC106139260
LinkDB
Position
13:complement(join(4728024..4728198,4728296..4728476,4728678..4728738))
AA seq 138 aa
MSGPIQDVVEEDAADLQFPKEFENAETLLISEVDMLLEHRKAQNESAEEEQEFSEVFMKT
LTYTNMFKKFKNKETIAAVRNLLQSKKLHKFEVASLANLCPETPEEAKALIPSLEGRFED
EELRILLDDIQTKRSLQY
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtcaggaccgattcaagacgttgtggaagaagacgcggcagatttgcaatttcctaaa
gaattcgaaaatgcggaaactctacttatatcagaagttgatatgttattagagcataga
aaagcacagaatgaatctgctgaagaggaacaagaattctcagaagtttttatgaaaact
cttacatacaccaacatgttcaaaaaatttaagaataaagaaacaattgcagctgtaaga
aaccttcttcaatcaaagaaactccataaatttgaagtcgcaagtcttgctaacttgtgc
ccagagacaccagaagaagcaaaagcgttaataccctctctagagggcagatttgaagat
gaagaactaagaatattattagacgacattcaaacaaaacgcagtttgcagtattag

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