Amaranthus tricolor (tampala): 130798140
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Entry
130798140 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130798140 isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130798140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130798140
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130798140
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
130798140
FA (Fanconi anemia) pathway
Downstream FA components
130798140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
130798140
NCBI-ProteinID:
XP_057517001
LinkDB
All DBs
Position
13:complement(14613762..14631121)
Genome browser
AA seq
1203 aa
AA seq
DB search
MSENPKNLYHIGGIPVEFPYKPYGSQLAFMGRVISTLDRAQKDGHCHALLESPTGTGKSL
SLLCSALAWQRHRGTNNPNLQQQMQCKPDSRADSDPLNHGGGFVVDSQLSETSTMEASPS
ATTSKNKKEKVTTIFYASRTHSQISQVIREYQKTAYRVPMAVLASRKHYCTNARVHGGDK
LDEECKLLLEDKETGCPQFKNHHKVTSHPSLQKGGCHEAHDIEDLVKVGKRVKGCSYFAA
RALADNAHIVFCPYSYIVNPIVRRAMEVDIKGAVLILDEAHNIEDLSRDAGSVDIDEESM
QQLQMELGQLCAGDSLTYQPLYEMVQDVLSWMERRKDSLEKRGFQHYCSCWTGDKALKEL
QEANISQQCFPILQECAVKAIKVAADSESGLAHLSGMSATTLEGLFCSLNYFFQGDGIHI
HDYQLVIQWLFVKDTGSWRLTFSMWCLNPAVVFRDIANLSLSVILTSGTLSPMSSFSSEL
GIQFGTLLEAPHVIDIESQVWASVISMGPRNYPLNASYKTADVYAFQDAVGKALEELFKV
VPGGSLVFFPSYKLMDKLCKRWIETGQWSHMNARKTVFVEPRGSQEDLDTVLKDYYNAIH
PPTRHTLGKKRKLKKVNTNGCTTYNSVGDCKEGAALLAVCRGKVSEGIDFSDENARAVII
VGIPFPNVYDIRIAEKKKYNDTHKCSKTLLSGSDWYCHQAFRALNQAAGRCIRHKHDYGA
IIFLDERFREERNTIYISKWLRKSIRTFENFETSVEGLRSFFSSIKERVGNACKPQDSIT
NSEIIPPDNSVKRSIKVKSRELIKPKVGEERLSSGSMIMPSPGLSHCLSHRTGGSSYYKT
VRSLSYKGIQESSPLEENTDTQKENDAKCDGGEDMSCCGTPCVPSCEERLELSVVKEALS
LENYCVPCPVASMNEEISHSTLVQTSVVFDQATHMSLTGSAESPSKVTCIDMTPERNGRE
ETNGLIKEIESSANLSVNSHAQKRRIMYNSQQMKSIPKMKFDMVTADKFQNNRTMDYSVL
NESSHQTPKVESNVNFSACELKPSIQPRDIYLNCGNFCLDQRLHIFCSLCRNSLGLPGRS
SYISCVLTSLSKYILSSLSNENKKQSLQSSPSLVPVLIVDSLSVDQRLYQRNCTNIPGQG
IWCQEDGCVYNSIFCPFCISPNHCLGVQIMAADASNIQLIGKILFYYDRLEVKDLSTTRE
RIL
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaccctaaaaatctttaccatatcggaggaattccagtcgaattcccttac
aaaccgtatggttctcaacttgcatttatgggtcgcgtaatttccacacttgatcgagct
caaaaagacggccattgccatgctttactcgaatccccaactggaactggaaaatcttta
tcgctactttgttctgctttagcatggcaacgtcatcgcggtaccaacaaccctaatttg
caacaacagatgcagtgcaaacccgattctagggctgattctgatcctcttaatcacggc
ggtggttttgtggttgattcccagctttctgagacatcaacaatggaggcatctccatct
gcaacaaccagtaaaaataaaaaggagaaagtgaccactattttttatgcctcgagaact
cattcacaaatctctcaagttattcgtgaataccagaagactgcttatagggtcccaatg
gctgttttggcctcgagaaagcattattgcacaaatgcaagggttcatgggggagacaag
ctagatgaggaatgcaagttgcttcttgaagacaaggaaactgggtgtccacagttcaaa
aatcatcacaaagttacgagtcatccatcgctacaaaaaggtggctgtcacgaggctcat
gacattgaagatcttgtcaaagttggaaagagagtaaaaggttgctcctattttgcagcg
cgtgcattggctgataatgcacatattgttttttgcccatatagttatatagttaatcca
attgttagacgagccatggaagttgatatcaagggggctgtcctcattcttgatgaagcc
cacaatatcgaagacttgtctcgggacgctggtagtgtggatattgatgaagagtctatg
caacaattgcagatggagttaggtcaactctgtgcaggggactcattgacataccaacct
ttgtatgaaatggtccaagatgtcttaagctggatggagcgtcgaaaagatagcttagaa
aagcgtggatttcagcattattgttcatgctggacaggggacaaggctctaaaggagctc
caggaagcaaacatatcacaacaatgctttccaatcttgcaagagtgtgctgtcaaggca
attaaagttgctgcagatagtgagtccgggttagctcatttaagtggaatgtcagcaaca
acattggagggtcttttctgttcattgaattatttctttcagggtgatgggattcacata
catgattaccaacttgttattcagtggctcttcgtaaaagacaccggtagctggagactt
actttcagtatgtggtgcttgaacccagctgttgtattcagagatattgctaatctatca
ttatcagtgattttaacatctgggactctatctccgatgagttcattttcttctgaacta
gggatccaatttggtacccttctagaggctccacatgtaattgatattgaatctcaggtt
tgggcttctgtaatttccatgggtcctcgtaattatcctctaaatgctagctacaagact
gctgatgtatacgctttccaggatgctgttggcaaagccctagaggagttgtttaaggtt
gttcctggtggctcccttgtgttctttccaagttataagctaatggataagctttgtaaa
aggtggattgaaacaggccaatggtctcacatgaatgcaagaaaaactgtctttgttgag
cctagaggaagccaagaggatttggatactgttctgaaggattattacaatgctattcat
ccacccacaaggcataccctaggaaaaaaaagaaagcttaagaaagtaaacaccaatggt
tgtaccacatataactcagttggtgactgtaaggaaggggctgcacttcttgcagtttgc
cgaggaaaggtttctgaaggaattgatttttcagatgaaaatgctcgtgctgttataatt
gttggcatacctttcccaaatgtatatgacatccgaattgctgaaaagaagaaatataat
gacacacataaatgttctaaaactctgctgagtggcagtgactggtactgccaccaagcc
ttccgtgcactaaaccaggctgcaggtagatgcattcgtcataaacatgattacggggcc
ataatcttcttagatgaacggtttcgtgaggaaagaaatacaatctacatttcaaagtgg
cttaggaaatcaattagaacatttgagaacttcgagacatcggttgagggtttgagatca
ttcttctctagcattaaggagagggttggcaatgcctgtaaaccacaagattctattacc
aattcagaaattattccacctgataattctgtaaaaagatcaataaaagttaaaagtcgg
gaattgatcaaaccaaaagtcggagaagagagattgagttctggcagcatgatcatgccg
tctcccggactctctcattgtctatcacacagaactggtggtagctcttattataagaca
gtaagatctctaagctacaaggggattcaggaatcttcaccacttgaagagaatactgac
acccagaaagagaatgatgcaaaatgtgatggtggggaggatatgagttgctgtggaact
ccttgtgtgccttcttgtgaagaaaggctagagctttctgtcgtcaaggaggctctttca
cttgaaaactattgtgtaccatgtcctgtggcatccatgaatgaggaaatttctcactct
accttagttcagacatctgttgtgtttgatcaagcaactcacatgtccttaacaggttca
gctgaatctccttcgaaagtgacatgtattgatatgactccagaaaggaatggcagagaa
gaaacaaatggattaatcaaggaaatagagtcatcagcaaatttgagtgttaattctcat
gcacagaaaagaaggataatgtataattcccaacagatgaaatccatcccaaagatgaaa
tttgatatggtgacagcagataaatttcaaaataatagaacgatggattactcagtgtta
aatgagagttcccatcaaacaccaaaagttgaatcaaatgtgaacttctcagcatgtgaa
cttaagccaagcattcaacctcgtgatatatatttgaattgtggcaatttctgtttggat
caacgattgcacatattttgctcactctgcagaaactcattaggtcttcctggaagaagc
tcatatatttcatgtgtattgacttcattatcaaaatacatcttgtctagtctttctaat
gaaaataagaaacaaagtctgcagagttcaccatcccttgtcccagttctgatagttgat
agtttgtcagtggatcagcgactttatcagaggaattgcacaaatattccagggcaaggt
atctggtgccaagaagatggatgtgtatacaattccattttttgccctttttgtatttct
cctaatcattgtttaggagtgcagatcatggctgctgatgcatcaaacattcagttgatt
ggtaagatactcttttactatgatcgtttggaagttaaagacttgtctaccacaagagag
aggattctttga
DBGET
integrated database retrieval system
