Amaranthus tricolor (tampala): 130808839
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Entry
130808839 CDS
T09367
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03020
RNA polymerase
atri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130808839
09124 Replication and repair
03420 Nucleotide excision repair
130808839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130808839
03400 DNA repair and recombination proteins [BR:
atri03400
]
130808839
Enzymes [BR:
atri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130808839
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
130808839
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
130808839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
TACC_C
Motif
Other DBs
NCBI-GeneID:
130808839
NCBI-ProteinID:
XP_057530337
LinkDB
All DBs
Position
3:34299376..34308756
Genome browser
AA seq
1860 aa
AA seq
DB search
MDIRFPYSPAEVTKVQLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKIVLSIMRCVCYNCSKILADEEDHK
FKQALKIRNPKNRLKRILEACKNKRKCEGGDSIDVQDQDDGEPVKKSRGGCGAQQPTFTI
EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLTAEKVLSVLKRISDEDCQLMGFNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIR
DDGQRLDLRYLRKSSDHHLELGYKVTLSLGVSFSAALELAFSDFINASIQVERHLNDGDF
VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFEARAEV
LELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP
QPAILKPRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGILTPGDTRVLVERGELLSGT
LCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATM
ETINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRS
LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPES
RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV
RNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDATYRYEFDAENWEPDYMLKEHV
DDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDM
REKSDMHPMEIVEAVDKLQERLKVVPGDDFLSKEAQKNATLFFNILLRSTLASKRVLKEF
KLNREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT
LGVPRLREIINVAKKIKTPSLSVFLHPEISKTKERAKNVQCILEYTCLRSVTHATEVWYD
PDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKIN
LEFSDDMTCIFTDDNAEKLILRIRIVNDEAQKGDLEADSAEDDVFLKKVASSMLTEMALK
GIPDINKVFIKQSKVNKFDEEKGFKAENEWMLDTEGVNLLAVMCHEEVDATRTTSNHLIE
VIEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT
GPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEDMLRHAI
ELQLPSYVENLEFGMTPARSPISGTPYHDSIMSPSYLLSPNLRHSPISSDAAFSPFVSGM
GFSPAASPYPSPGGSGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPGSPGYSPTSPAYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP
TSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSP
SSPSYSPSSPYSSGASPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSDKDGRSNR
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgatttccatactctccggcagaagtcactaaagttcaattgattcagttc
ggaattctcagtcctgatgaaatccggcaaatgtcagtggttcaagtggagtttagtgag
accacggagagagggaaacctaagcctggtgggttaagcgatccgagattaggaacaatt
gatcggaaaatgaagtgtgagacatgtacagcaaatatggcggaatgccccggtcatttt
ggacaccttgagcttgccaagcctatgtttcatattgggtttttgaagattgtgcttagt
attatgcgttgtgtttgctacaattgctctaagattcttgctgatgaggaagaccataag
tttaagcaagcattaaaaataagaaatcccaaaaatcggttgaagagaatattagaagct
tgcaaaaacaaaagaaaatgtgaaggaggtgattcaattgatgtacaagatcaggatgat
ggggagcctgtcaagaaaagtcgtggtggctgtggtgcacaacagcccacgttcactatt
gaaggtatgaaaatcattgctgagtacaagatgacaaagaagaaaaatgatgagcaggaa
cagctccctgagcctgctgaaagaaagcagcagctaacggctgagaaggtgcttagtgtg
ctgaagagaataagtgatgaagactgtcaattgatgggttttaatccaaaatatgctcgc
cctgactggatgattcttcaagttcttcctattcctccacctcctgtgagaccatctgtg
atgatggatacatcttcaaggagtgaggatgatttgacccatcaattagccatgatcatt
cgtcataatgataatctgagaagacaagagaggaatggggcacctgcacatatcatctct
gaatttgcacagctgctgcagtttcatattgctacatactttgacaacgagctgcctgga
cagccaagggccacacagcgatcaggtagaccaattaagtccatatgttcaaggctgaaa
gccaaagaaggtcgcataagaggcaacttgatgggaaaacgagtggatttttctgcacgt
actgttattacacctgatccaaatattaatattgacgaattgggtgtgccatggagtata
gcattgaacctcacgtatccagagactgtgactccttataatattgaaaggttgaaagag
cttgttgactatggccctcatcctcctccaggtaaaactggggccaagtatatcattagg
gatgatggtcagaggcttgatcttcgctatttaaggaaaagtagtgaccatcatttagag
ctagggtacaaggtaaccctttcactaggcgtttccttttctgcagcacttgaactagca
ttttctgactttatcaatgcttcaatacaggttgagaggcatttgaatgatggcgacttt
gtgcttttcaaccgacagccaagtctccacaaaatgtctattatgggtcacaggataaag
atcatgccctattctacatttagattaaatttgtctgttacatcaccttacaatgctgat
tttgatggtgatgaaatgaacatgcacgttcctcaatcctttgaggctcgggcggaagtt
cttgaattaatgatggttcctaaatgtattgtttccccacaagcaaacaaaccagttatg
ggaattgtgcaggatacactattgggctgtcgtaaaataacaaaaagggatacttttatt
gaaaaggatgtatttatgaatattcttatgtggtgggaggattttgatggaaaagttcct
caacctgctatcttgaagcccaggccaatttggactggaaagcaagtattcaatctaatt
ataccgaagcagataaatcttgttagattttctgcatggcatcaggagacagaaacaggt
attctgacccctggggatacccgtgtcctggtagaaagaggagagctactatctggaacg
ctttgcaaaaagaccctaggatcatccagtgggagtttaattcatgtcatatgggaagaa
gtcggtccagatgctgctcgtaaatttttggggcacacccagtggcttgttaattattgg
ttattacagaatggttttagtattgggattggagatacaattgctgatgcagcgaccatg
gaaaccattaatgaaacgatttcgaaagctaaaaatgaagtgaaaaatcttataagagcg
gcgcaggaaaagcagttggagcctgaacctggacgtacgatgatggaatcttttgaaaac
agagttaaccaggttttaaataaagctcgtgatgatgctggaagtagtgctcagaggagt
ctgtctgaaagtaacaacctgaaggctatggttacagcaggatccaaaggaagttttatc
aacatatcccagatgactgcttgtgtggggcagcagaatgttgaaggcaaacgaatacca
tttggttttgttggtcgaacattacctcatttcacaaaggatgattatgggccagaaagt
cgtgggtttgtggagaattcatatctgagaggattaactccacaggagttctttttccat
gctatgggaggtagagaaggtctcattgatactgctgttaaaacttctgagactggttac
atacaacgaagactagtcaaggctatggaggacatcatggtcaaatatgatgggactgtg
aggaattctctcggggatgttatacagtttctttatggtgaagatggtatggacgctgtt
tggattgaatctcagaagttggattccctgaaaatgaagaaatcagaatttgatgccaca
tacagatatgagtttgatgctgagaactgggagccggattatatgttgaaagagcatgtg
gatgatctaaaaactattcgtgagttccgtaatgtgttcgatgctgaagtccaaaagctt
gaagttgatagatgccaacttgctactgatattgcaaccacaggtgataactcttggcca
ttgcctgttaatctcaagaggctgttatggaatgcccaaaagacattcaaggttgacatg
cgagaaaagtctgatatgcacccaatggaaattgtagaagctgtggataagcttcaggag
aggttgaaggttgttcctggtgatgactttttaagtaaggaggctcagaagaatgccacc
ctcttttttaacatcttgcttcgcagtacactggctagcaaacgtgttttgaaggagttc
aagcttaaccgagaagcttttgactgggttataggtgaaatagagtccaggtttttgcag
tccttggtggctcctggggaaatgataggctgtgtcgctgcccagtcgattggtgagcct
gccactcagatgacgctcaacactttccactatgctggtgttagtgctaagaatgtcact
cttggtgttccaaggttgagggagatcatcaatgtggccaaaaaaatcaaaactccctca
ctatcagtctttttacatcctgaaattagcaagaccaaggagagagctaaaaatgttcaa
tgtattctagaatatacatgtctgcgaagtgtgactcatgcgactgaagtgtggtatgat
ccagaccctatgagcactatcatcgaggaagatgtggattttgttaggtcttactatgaa
atgccagatgaagaggtatcgcctgataaaatttctccctggctgcttcgtatagaattg
aaccgtgaaatgatggtggacaaaaagttgagcatggctgatattgcagagaaaatcaac
ctggaattcagtgatgacatgacttgtatctttactgatgataatgctgagaagttgatc
cttcgtattcgtattgtgaatgatgaagctcagaagggggatttggaggctgattctgcc
gaggatgatgtattcctcaaaaaggttgctagtagcatgctgactgagatggcacttaaa
ggaattccagatattaacaaggttttcattaagcagagtaaagtgaataagtttgatgag
gaaaaaggtttcaaggctgaaaatgagtggatgttagatactgaaggtgtcaaccttctt
gctgttatgtgtcatgaggaagttgatgcaacaaggacaacaagtaatcatttgattgaa
gttatagaagttcttggaattgaggctgttcggaaggccttgctagatgagttgcgtgtt
gtcatttcctttgatggatcgtatgtcaactatcgtcatttggctattttgtgtgataca
atgacatatcgtgggcatctaatggctattactcgtcatggtatcaaccgaaatgatact
gggccgttgatgaggtgctcatttgaagaaacagtggatattcttcttgatgctgctgta
tatgcggaatcggattatttgaggggtgtgacagaaaatattatgttaggacagctagcg
ccaattgggactggtggctgttcattatatcttaatgaggatatgttgcgacatgctatt
gaactccagctaccaagttatgtggaaaatttggaatttggtatgacaccagctcgatca
ccgatatctggaacaccttaccatgatagcatcatgtctccaagttacttgttgagccca
aatcttcgtcattcgcctatcagcagtgatgctgccttttctccatttgtcagtggcatg
gggttttctcctgcagcatccccgtatccttcgccaggaggatctggatatagccctact
tccccaggatacagccctacttcaccaggctatagccctacttcacctgggtatagccca
acttccccaacttacagccccgggtctcctggctacagtccaacaagtccagcatattca
cctacgagcccatcttactctcccacctcgcccagctacagtcctacctcaccgagctac
agccccacatcaccgagctatagccccacttctccaagttacagccccacttctccagca
tacagccccacatcaccagcgtacagccccacatcaccagcgtacagccccacatcacca
tcatacagccctacatcaccatcttacagccctacatcaccatcctacagccctacatct
ccatcctacagccccacatccccatcctacagccccacatcaccttcatacagtccaaca
tcacctgcatacagtcctacttccccaggatatagtcccacctctcctagttatagtcct
acttcaccaagttacagtcctacttctccaagttataacccatcagccaagtatagtccc
tcacttgcatattctcccagcagtccgagaatttcaccatccagtccctacagtcctaca
tctccaaattacagtccaacgtcgccatcttactctcctacatcgccttcttattcgcct
tcaagcccaagttatagtccaagcagtccatatagttctggtgcaagtccagattatagc
cccagctctccacaatacagtcctagtgcaggatactctccaagtgctccgggttactct
ccttcgtccaccagtcagtacactccacaaatgagcgacaaggatggtagaagcaaccgt
taa
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