Agrobacterium vitis VAR03-1: RvVAR031_26700
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Entry
RvVAR031_26700 CDS
T08810
Symbol
xdhB
Name
(GenBank) xanthine dehydrogenase molybdopterin binding subunit
KO
K13482
xanthine dehydrogenase large subunit [EC:
1.17.1.4
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00230
Purine metabolism
avf01100
Metabolic pathways
avf01120
Microbial metabolism in diverse environments
avf01232
Nucleotide metabolism
Module
avf_M00958
Adenine ribonucleotide degradation, AMP => Urate
avf_M00959
Guanine ribonucleotide degradation, GMP => Urate
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
RvVAR031_26700 (xdhB)
Enzymes [BR:
avf01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.4 xanthine dehydrogenase
RvVAR031_26700 (xdhB)
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GFIT
Motif
Pfam:
MoCoBD_2
MoCoBD_1
Ald_Xan_dh_C
Motif
Other DBs
NCBI-ProteinID:
BCH55060
UniProt:
A0A6S6MRI4
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All DBs
Position
1:2913734..2916079
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AA seq
781 aa
AA seq
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MDKALFTTTAAIQGPMHQSLRHDSAHKHVAGSAEYIDDIPEPAGLLHGALGMADRAHADI
LSIDLSAVEAHPGVVAVLTASDIPGTNDVSSGGRHDEPLIATDRVEFHGQTIFAVIAETR
DAARKAARLAKIEYRDLPFWTDIDAALENGAPLVTPGMVLKRGTPETELDKAEHRLQGAM
RIGGQEHFYLESHIALAIPGEDDDVTVWSSTQHPSEIQHIVGHVLDISSHAITVNVRRMG
GGFGGKETQGNQFAALAALAAKKLNRAVKFRPDRDEDMSVTGKRHDFKMDFDVAFDGDGR
IHAIEANFAARCGYSSDLSGPVTDRALFHADSSYFYPHVKLTSQPLKTHTVSNTAYRGFG
GPQGMLGAERVIEEIAYSLGKDPLEVRKANFYGETGSGRDLTPYHQQVEDNIIARVVEEL
ETSCDYQARRAAILDFNKTSPVIKKGIALTPVKFGISFTMTAFNQAGALVHVYQDGSIHL
NHGGTEMGQGLYTKVAQVIADGFQVDIDKVKITATTTGKVPNTSATAASSGSDLNGMAAY
DAVRQIKERLVAFASEKWGVSQADVVFLPNRVRVGGEEIAFPDFIRQAYFARVQLSAAGF
YKTPKIHWNRETGRGTPFYYYAYGASCTEVSIDTLTGEYLIDRTDILHDVGKSLNPAIDI
GQIEGGFVQGMGWLTTEELWWDGKGRLRTHAPSTYKIPLASDRPKIFNVKLADWAENTEL
TIGRSKAVGEPPFMLANSVLEAISMAVASVADYRFCPRLDTPATPERVLMAVERLKEAQR
A
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggataaggccctcttcaccaccactgccgccatccagggtccgatgcatcaatcgctg
cgccatgattcagcccataagcatgtggccggaagtgccgaatatatcgacgatattcca
gaacccgccggtcttctgcatggcgcgctcggcatggcggatcgcgcccatgccgacatt
ctctccatcgatctgtccgccgtcgaagcccatcccggcgtcgtggcggtgctgacggcc
agcgacattcccggcaccaacgacgtctcctccggtgggcggcatgacgaaccgttgatt
gccaccgaccgggtggagttccacggccagacgatctttgcagtgattgcggaaacccgc
gacgcggcccgcaaggcggcaaggcttgccaaaatcgaataccgcgacctgcccttttgg
accgatatcgatgccgcactggaaaacggcgcgccgctcgtcaccccaggcatggtgcta
aagcgcggcaccccagaaactgagctggacaaggccgaacaccggctgcaaggcgcgatg
cggatcggcggccaggagcatttctatctggagagccatatcgcgcttgccattcccggc
gaagacgatgatgtcacggtctggtcctcgacccagcatccatcagaaatccagcatatc
gtcggccatgttctggatatttcctcgcatgcgatcaccgtcaatgtgcgacgcatgggc
ggcggcttcggtggcaaggaaacccagggaaatcagtttgcggcactggcggccttggcc
gccaagaagcttaaccgggctgtgaagtttcgcccggaccgcgacgaagacatgagcgtt
accggcaaacgccatgattttaaaatggatttcgacgtcgccttcgatggcgatggccgt
atccacgccatagaggcaaacttcgccgcccgctgcggctattcctccgacctgtccggc
cccgtcaccgaccgggcgctgtttcacgccgatagcagctatttctacccgcatgtgaag
ctgacctcgcaaccgctaaaaacccatacggtctccaacaccgcctatcgcggtttcggc
gggccgcagggcatgctgggggcagaacgggtgatcgaggaaatcgcctatagcctgggc
aaagacccgctggaggttcgcaaagccaatttctatggcgaaacgggctctggccgcgac
ctgacgccctatcaccagcaggtggaagacaatatcatcgcccgcgtggtggaagagctg
gagacctcctgcgattatcaggcacggcgcgcggcgatcctcgacttcaacaagaccagc
ccggtgatcaaaaagggcattgcgctgaccccggtcaagttcggcatttccttcaccatg
accgccttcaaccaggcgggggcgctggtgcatgtctatcaggacggctccatccatctc
aaccatggcggcaccgaaatgggccagggtctctataccaaggtggcccaggtgattgcc
gatggcttccaggtcgatatcgacaaggtgaagatcaccgccaccacgacaggcaaggtg
ccgaatacctcggccaccgccgcctcctccggctctgacctgaacggcatggccgcctat
gatgccgtgcgccaaatcaaggagcggctggtggcgtttgcctcggaaaaatggggcgtg
tcgcaggcagacgtggtgtttctgcccaatcgtgtcagggtcggcggtgaagagattgct
ttccccgacttcatccgccaggcctatttcgcccgggtccagctctcggctgccggtttc
tacaagacgccgaaaatccactggaatcgcgagaccgggcgcggcacaccgttctattat
tatgcctatggcgcgtcctgcaccgaagtctcaatcgacacgctgaccggcgaatatctt
atcgaccgcaccgatattctccacgatgtcggcaaatcgctcaatcctgccatcgatatc
ggccagatcgaaggcggcttcgtgcagggcatgggctggctgacgacggaggaattgtgg
tgggacggcaagggacggctgcgcacccacgcaccctccacctacaagatcccgcttgcc
tccgaccgcccgaaaatcttcaacgtcaagctggcggactgggcggaaaataccgaactc
accataggccgctccaaggcggttggcgaaccgcccttcatgctcgccaattcggtgctg
gaggcgatctccatggcggtggcaagcgtcgccgattaccggttctgcccgcgcctcgat
acacccgccacgccggagcgggtcttgatggcggtcgagcgattgaaggaggcacagcgc
gcgtga
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