Apaloderma vittatum (bar-tailed trogon): 104267130
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Entry
104267130 CDS
T08559
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104267130 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avit03021
]
104267130 (POLR1A)
Enzymes [BR:
avit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104267130 (POLR1A)
Transcription machinery [BR:
avit03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
104267130 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Pox_C7_F8A
HMG_box
Motif
Other DBs
NCBI-GeneID:
104267130
NCBI-ProteinID:
XP_009872099
LinkDB
All DBs
Position
Unknown
AA seq
1683 aa
AA seq
DB search
KLSVKSISNPQYLDNVGNPAINGLYDLALGPPDSKEVCATCMQNFSNCPGHFGHIELPLT
VYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLLLSQLKVLEKGLLHAVHDLEIILNRFL
EQCADATGSEIEEELNHHVQEILQSYQTEDQCSNVKNVCECRNKLIAQFWKAHMSSKKCP
NCKSRRSLVRKEHNSKLTVTYPSAVYHKAGGEGILDEPAALDESQLGKRGYLTPMTAKEY
ILALWKNEGFFLRYLFPGMDPHESSGFSPDMFFLDLIVVPPSRYRPINRVGDRLFTNGQT
VNLQAVMKDAKVIRKLLVFMAKEQCQPIKITEEIQTETGENDEPLDHSILTQIPGQTIAD
KLYNAWIRLQSHVNIVFDSDMDKLITEKYPGIRQLLEKKEGLFRKHMMGKRVDFAARSVI
CPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPKVHPGASMVINEDGSRT
VLSASSLTQREAIAKQLLTPSAGAPPTGLKIVCRHIKNGDVLLLNRQPTLHRPSIQAHRA
RILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLAFTDQQYLVPKDGKP
LPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDKKGRIKIFPPAIMKPQPLWTGKQ
VVSTLLINIIPENHDPLNLTGKAKIGGRAWVKGPANRCLNLDSMCESQVIIRNGELLCGV
LDKAHFGSSAYGLVHCCYELYGGETSGKVLTCLGRLFTAYLQLYRGFTMGIEDILVKPEA
DHKRQKIIEKSTQHGIEAVRAALNLPETAPCEEVQGKWQDAHLCKDQRDFNMVDLKFKEE
VNNYNNEVNKVCMPLGLHRSFPENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPL
MASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYL
QRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPEQFPFIAENYEVIQ
KTNHLDEALARLESHQADRQFKAIKKWRARHQNSGQREGGFLMFSQKKMASVKAQSPGGE
IKNGRDPATLQLLKMWYELDEKKRRKYLKKTNKCPDPSLGVWRPDTYFASVSETFENGVE
DYISKWESENRQSYVHPALSSDRLKELLYLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTL
NTFHFAGRGEMNVTLGIPRLREILMVASANIKTPTMSVPVFNTKKALKKVKQLKKQLTRV
CLAEVLQKVEIEESLHVRCKRNKHRLYKIKFYFLPHEYYRDEKCVKPREILHFMETRFFK
IFLEAIKRKSAKMASFTEVSTRKATRKDLDGDQDKTQNNQEAPAEEEEENIVDAEADEGD
GDATEAKRRKNQEEEVDYESEEENGEENVDENVEDEGAESEKEEKAPGSEEDQNGAAGDE
SEHLSFMPQTKKERNRLHQSADLRVNAVVDSHPSIQDYIFDTENELWCEVSVALPLMKVY
FDLSSLLGSLARSTVIHEVKGITRCLLNESTNKHGKKEFILHTEGINLVELFRYSDILDL
SRLYSNDIHAMAKNYGIESALRVIIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGFYKPL
NRFGIQSNSSPLQQMTFETSYKFLKEATMMGAHDELRSPSACLVVGKVVKGGTGLFDLKQ
PLT
NT seq
5053 nt
NT seq
+upstream
nt +downstream
nt
gaaactgagtgtaaaatccatatcgaatcctcagtatttggataatgtggggaatccagc
cataaatgggctgtatgacttggctttgggacctccagactccaaagaagtgtgtgcaac
ttgcatgcagaacttcagcaactgccctggtcattttggtcatatagaactgcctctgac
tgtctacaaccctctgttttttgataaattataccttctaattcgaggttcttgtttaaa
ttgtcacatgctgacatgtactcgagctgtggttcacttgctgctaagtcagctgaaggt
tctggagaaagggttgcttcatgcggtccatgatcttgagatcattctgaacaggttttt
agagcaatgcgcagatgcaacaggctcagaaattgaagaagagttaaatcaccacgttca
ggaaatattacagagttatcaaacagaggatcagtgttcaaatgtcaaaaacgtatgcga
gtgtagaaataaactgatagcacagttctggaaagcacatatgagttcaaagaaatgccc
gaattgcaaatccaggagatcactagtgcggaaagagcataacagcaagctgacagtgac
ctacccctctgcagtgtaccataaggcgggaggggaaggcattctggatgagccagcagc
tcttgatgaaagtcagttagggaagagaggatacctgacgccgatgactgccaaggaata
catcctggctctgtggaagaacgaaggtttctttctgcgttatctcttccctgggatgga
tccccatgagagttcaggattcagtccagacatgttttttttagatctgattgtggttcc
accttcaaggtatcgtcccataaatcgtgttggagaccgactgtttacgaatggtcagac
tgtgaacttgcaggctgtcatgaaggatgccaaagtgatacggaaactcttggttttcat
ggcaaaagaacaatgtcagccaataaaaattacagaagaaatccaaacagagacaggaga
gaatgatgaacccctggaccattctatcctgacacagattccaggacagaccattgcaga
taagctctacaacgcttggatccgtcttcagagccatgtcaacattgtatttgatagtga
catggacaaactgataacagaaaaataccctggtattcgtcagctattagagaaaaaaga
aggactattccgcaagcacatgatggggaagcgtgtggattttgctgctcgatcagtcat
ttgccccgatatgtacattggaaccaatgagattggcattcctatggtatttgctaccaa
actgacttaccctcagccagtcactccctggaatgtgaaagagctgcggcaggctgtcat
caacggcccaaaggttcaccccggcgcctccatggtcattaacgaagatggatctcggac
ggtgttgagcgccagcagcctcacccagagggaagccatagccaagcagctccttactcc
atcagcaggcgcccccccgacggggctgaagattgtgtgtcgacatattaaaaacgggga
tgtccttttactgaaccgccagcccactcttcatagaccctccatccaagctcaccgagc
ccgcatcctgcctggagaaaaagtgctgaggcttcattatgccaactgcaaggcttacaa
cgctgattttgatggcgatgaaatgaacgcccattttccacagagtgagctgggcagagc
agaagcctacaccttagcctttactgatcaacagtatctggttccaaaggatgggaagcc
acttcctggcttgatccaggatcacatgatttctggagtcagcatgacaatccggggctg
ctttttcaccagggagcaatatatggagcttgtttaccgaggattaacggacaaaaaagg
aagaattaaaatctttcctcctgccattatgaaaccacagccattatggacaggaaagca
ggttgtttctacgttgttaataaacatcattccagaaaaccacgatcctctgaatttgac
tgggaaagctaagattggtggaagagcctgggtaaaaggacctgcaaacagatgtctgaa
tcttgattcaatgtgtgaatctcaggttattattagaaatggggaattactctgtggagt
cttggacaaagctcactttggcagctctgcctatggcctggtccactgttgctatgagct
ctatggaggtgaaacgagtggcaaagtgctaacgtgtctcggacgcctcttcactgctta
tctgcagctctacaggggatttacaatggggattgaagatattttggttaaacctgaagc
agaccacaagaggcaaaaaatcattgaaaagtcaacccagcatggtattgaagctgttag
agctgctcttaatttgccagaaacagcgccatgtgaggaggtccaagggaaatggcagga
tgcccatctctgcaaagaccagagggattttaacatggttgatctgaaattcaaggagga
agtaaacaattacaacaatgaagttaacaaggtttgcatgccccttggactccacaggag
ctttccagagaacaatttgcagttgatggtacagtcaggagccaaaggatccactgtaaa
taccatgcagatttcttgtttgctgggccagattgagttggaaggtcgaagacctcccct
gatggcatctggcaaatcgctgccgtgtttccagccctatgacttttcccccagctcggg
aggatttgtgacgggaagatttctcaccgggatcaaaccttcagaattcttctttcactg
catggccggcagggaaggtctcgtggatacagctgtcaaaaccagccgttctgggtacct
tcaaaggtgtatcataaagcatttagaaggactggtggttcaatatgacctgactgtacg
agatagtgatggcagcgtggtgcagtttctatatggagaagatgggcttgatatccctaa
aactcagttcttacaacccgagcagtttcctttcattgcggaaaactatgaggtaatcca
gaagacaaaccatctggatgaagctttagcaaggttggagtctcaccaagctgaccggca
gttcaaagccatcaaaaagtggcgagccaggcaccaaaactctgggcaaagagaaggagg
ttttctgatgttctcccaaaagaaaatggcaagtgtaaaagcacagagtccaggaggaga
aatcaaaaatggaagagatcccgctactttacagttactgaagatgtggtatgaactaga
tgagaagaaacgaagaaagtacctgaagaagacaaataagtgtcctgacccaagccttgg
tgtttggcggccagatacttactttgcatctgtttcagaaacatttgaaaatggagttga
agattatatcagcaaatgggaatctgagaacagacaaagttacgtgcacccagcactttc
ttctgataggttaaaggaattgttgtatctaaagtggcagcgatctctttgtgacccggg
agaagctgtgggtcttcttgcagctcagagtattggggaaccgtccacacagatgactct
gaacaccttccactttgctggcagaggtgaaatgaacgtcacattgggtattccgaggtt
gcgggaaatactgatggtggccagtgcaaatattaaaacaccaacgatgagtgttcctgt
gttcaataccaagaaagctctcaagaaggtgaaacagcttaagaaacagctcacaagagt
gtgcttagctgaggtcttgcagaaagttgagatagaggaatcccttcacgtgaggtgtaa
gcggaacaaacatcgcctctacaaaatcaaattttatttcttgccccatgaatactaccg
agacgaaaagtgtgtgaagcccagggaaatcctgcacttcatggaaacacggttctttaa
aatttttctggaagcaattaaaaggaagagtgcaaagatggcatcttttactgaagtcag
cacgcggaaggcaacacggaaagatttagatggtgaccaagacaagacacagaataatca
ggaggctccagcagaagaagaagaagagaacattgttgatgcagaagctgatgaagggga
tggcgacgctacagaagcaaaacggaggaagaaccaggaagaagaggttgattatgagag
tgaagaagagaacggggaagaaaatgttgacgagaatgtagaagatgaaggagctgaatc
ggaaaaagaagaaaaggctcctggttctgaagaagatcagaatggagcagctggtgatga
atctgagcatctttcctttatgcctcagacgaaaaaggagagaaatcgattacatcagtc
agcagacttgcgagtaaatgctgttgtggacagccacccatcaatccaggattacatatt
tgacaccgaaaatgaactttggtgcgaggtttccgtggcgcttcccttgatgaaagtgta
cttcgatctctcctccttgcttggctctcttgcgcgaagcacggtcattcacgaagtgaa
ggggatcacgcgatgcttgttgaacgaaagcaccaataagcacggaaagaaggaatttat
tctgcataccgaagggataaaccttgtagagctgttcagatactctgatattttggacct
gagcagactttattccaatgatattcatgccatggctaaaaattacggaatagagtctgc
cctgagagtgattataaaggaaataaaagatgtatttgctgtatatggaattgtggtaga
ccctcggcacctttcacttgtggcagactacatgtgtttcgaaggattttataaaccgct
gaatcgttttggaattcagtccaactcctcccctctgcaacagatgacatttgaaaccag
ctacaaattcttgaaggaagctacaatgatgggagctcatgatgaactgcgatccccttc
tgcctgcctggtggttggaaaagttgttaaaggagggactggtttgtttgatctcaagca
accacttacatag
DBGET
integrated database retrieval system
