Apaloderma vittatum (bar-tailed trogon): 104275665
Help
Entry
104275665 CDS
T08559
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104275665 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avit03400
]
104275665 (MSH6)
DNA repair and recombination proteins [BR:
avit03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104275665 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Autoind_bind
Motif
Other DBs
NCBI-GeneID:
104275665
NCBI-ProteinID:
XP_009869984
LinkDB
All DBs
Position
Unknown
AA seq
1199 aa
AA seq
DB search
MFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCSEPSDTEEEEEEEMEQMSGSASGNSDD
GNSEEDVKSNKRVMNRESAIKAKRRRVLDSDSDHDGSDVEFKPDVKEAASSEEASSGVDE
NESTDMETDAESVAESPVKVPSKRKRREVNKPAKRSSLENEHSETPKRAATVSLEAKSKL
TSFRAPESFESQANACSGGGGGFAAWEHEKLDWLQEGKKKDAHRRRQGDPAYDPCTLYVP
EDYLNKCTPGMRRWWQLKSQNFDAVIFYKVGKFYELCHMDAVIGVNELGLVFMKGTWAHS
GFPEIAFGRFSDVLVQKGYKVARVEQTETPEMMETRYKSMAHPTKFDKVVRREICRIITK
GTQTYSILDCDPSENHNKYLLSVKEKEDSSGHRVYGVCFVDTSVGKFYVGQFSDDRHCSR
FRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLISGSQFWNASKTLKVLLEEG
YFKEKQTSENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGACVFYLKKCLIDQELL
SLANFEEYVPVDIDAAKTTSSGSFFAKTDQRMVLDGVTLMNLEVLQNGTNGTTEGTLLER
IDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPDKTSEVSEHLKKLPDLERL
LSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIIDAMEEVASD
FKSRVLKQLVTRKAKNPDGRFPDLSAELRRWDTAFDHNQARKTGVITPKAGFDPDYDKAL
QDIKAVEEDLHKYLDKQRKLLGFKSVLYWGAGKNRYQMEIPESLISRNLPEEYELKSSRK
GYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIAVLDVLM
SLANYSQDGDGPLCRPVILLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNDIVIGSRDE
ESSSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASD
RIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAEKIKC
RTLFSTHYHSLVEDYSRNVAVRLGHMACMVENESEDPSQETITFLYKFISGACPKSYGFN
AARLANIPEEVIQKGHRKAKEFEKTTISLRIFRYLCLLLEGATRDADAVRKLTAMLDHL
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgttttatagtacaaagcctgaaattaaaagagcaatggtgctcgcagatgatgcaatg
agtaaagataaaactaagcggcttgaactggcagtatgcagtgaaccttcggacacagag
gaggaggaagaggaggaaatggagcagatgagtggaagcgcatcaggcaacagcgacgac
ggcaatagtgaggaggatgtgaagagtaataagcgagtaatgaacagggaaagtgccata
aaagccaaaagaagaagagtgttggattctgacagcgatcatgatggctctgacgtagag
ttcaagcctgacgtgaaagaagcagcaagcagcgaggaagctagtagtggggtggatgaa
aatgaatcgactgacatggagacggatgcagagagtgtcgcagaaagtcccgtaaaagtc
ccttccaaacgaaagagaagagaggtaaacaagcctgctaaaaggagtagcttagaaaat
gaacattctgaaacacccaaaagagcagcaacggtttctttggaagccaagtccaagctg
acatcatttagagcacctgaaagttttgaatctcaagcaaacgcttgcagtggaggcggt
ggtggctttgcagcgtgggaacatgaaaagcttgactggctgcaggaagggaaaaagaaa
gatgcgcaccggagacggcagggtgaccccgcttacgacccgtgtactctgtatgtaccc
gaggactatctcaacaagtgtacaccaggaatgcggaggtggtggcagctgaaaagccaa
aacttcgacgctgtgattttctataaagttggaaagttctacgagctgtgtcacatggat
gcagtcattggtgtaaatgagttgggcctcgtcttcatgaagggcacttgggcccattcg
ggctttccagaaattgcgtttggcagattctctgatgtcctggtgcagaagggctacaag
gtagctcgcgttgagcaaacggaaactccggaaatgatggaaacgcgctacaagtcgatg
gctcaccccacaaaatttgataaagtcgtgcgccgagaaatctgcagaatcatcaccaaa
ggaactcagacttacagcattctggattgtgatccctccgagaaccataacaaatacctt
ctgagcgttaaggaaaaagaagactcctctggacaccgtgtttatggggtctgctttgtt
gacacatcggtggggaagttttatgtgggccagttctcagatgacaggcactgctcaagg
tttaggactttagtagcgcattacactcctgtgcaggtcctgtatgagaaggggaacctg
tctgtggacacacagaagatactgaagggctcacttgtttcttgcattcaggaagggctg
atctccggttcccagttctggaatgcatctaaaacactaaaagtccttcttgaagaagga
tatttcaaggagaagcagacctctgaaaatggatgctctctgccttctgtaatcaaatct
ctgacttcagagagtgactcgctgggattaactcctggtgaaaacagtgaattagctctg
tcggctctcggggcatgtgtcttctatctcaaaaaatgtctgattgatcaggagctgtta
tcgctggcaaattttgaggagtacgtccctgtggacattgatgctgcaaaaactacaagc
tcaggtagtttctttgccaaaactgaccagcggatggtgctggatggagtcaccctgatg
aacttggaagttttgcagaacggaaccaatggaaccacggaaggtaccttgttggaaagg
attgactcgtgttgtacgccgtttgggaagcgactcctgaagcagtggctctgcgctccg
ctgtgcaatcctaaatccatcaacgaccgtttagatgctgttgaggaccttctggcagtg
cctgataaaacgtctgaagttagcgagcacctgaagaaacttcctgaccttgaaaggctt
ctcagcaaaattcacagtattggatcaccacttaaaagccagaaccatcctgacagcagg
gccatcttttatgaagagattaaatacagcaaaaaaaaaattgctgacttcttgtctgcg
cttgagggatttaaagtaatgaatgaaatcatcgatgccatggaagaagttgccagcgac
ttcaaatctagagttcttaagcagctcgtcacccgcaaagccaaaaatccagacggccgc
ttcccagatttgagtgcagagcttagaaggtgggatactgcttttgatcataaccaggct
cggaagacaggcgtgattactccaaaggcaggttttgaccccgattatgataaagcacta
caggacattaaagctgttgaggaagatcttcacaagtacctggataagcaacgcaaactg
cttggattcaaatctgtgctctactggggggcaggcaaaaaccgataccaaatggaaata
ccggaaagcttgatatcacgtaatttacccgaggaatatgagttgaagtcatccaggaag
ggatataaacgttactggaccaaggagatcgagaagatgctggccgccatggtcaatgct
gaggagcgcagagacgcagcactaaaagactgtatgaggcgtttgttttacaacttcgat
aaaaacagcaaggactggcagacagctgtggagtgcattgctgtgttggatgtcttgatg
tcccttgcaaactacagtcaagacggtgacggaccactgtgccgacctgtaattctgctg
cctgtggatagtgctcctcccttcctggaacttaaaaactcccgccatccgtgcatcacc
aaaactttctttggggatgattttattcctaatgacattgtgataggcagcagagatgaa
gagagcagtagcgaagcttcctgtgtgttagtaactggcccgaatatgggtggcaaatct
acactcatgagacaggctggtctcttggttataatggctcaactgggatgctacgtacct
gctgaagtctgcaggcttacgccgatcgacagagtatttacaaggcttggtgcctccgac
agaattatgtcaggtgaaagtaccttctttgttgaattgagcgagacttccagcattctc
cagcatgcaacagagcactcccttgttcttgtggatgaactgggcagaggcacggctact
tttgatgggacagctatagcgagcgcagttgtgaaagaacttgcagagaaaatcaagtgc
cggactctgttctccacacactatcactcgctggtggaggattattcacgcaacgtggcc
gtgcggcttggccacatggcgtgtatggttgaaaatgagagtgaagatccaagccaggaa
acgattacgttcctctacaagttcatttcaggagcgtgtccaaagagctacggcttcaat
gcagcaagacttgctaatattccagaggaagttattcaaaaggggcacagaaaagcaaaa
gagtttgaaaaaacaaccatttccctgagaatatttaggtacctgtgcctgctgctggag
ggtgcaacaagagacgcagatgctgttcggaaactcaccgccatgctcgatcacctttaa
DBGET
integrated database retrieval system
