Agrobacterium vitis VAT03-9: RvVAT039_14480
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Entry
RvVAT039_14480 CDS
T08809
Symbol
sucA
Name
(GenBank) 2-oxoglutarate dehydrogenase subunit E1
KO
K00164
2-oxoglutarate dehydrogenase E1 component [EC:
1.2.4.2
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv00020
Citrate cycle (TCA cycle)
avv00785
Lipoic acid metabolism
avv01100
Metabolic pathways
avv01110
Biosynthesis of secondary metabolites
avv01120
Microbial metabolism in diverse environments
avv01200
Carbon metabolism
avv01210
2-Oxocarboxylic acid metabolism
Module
avv_M00009
Citrate cycle (TCA cycle, Krebs cycle)
avv_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RvVAT039_14480 (sucA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
RvVAT039_14480 (sucA)
Enzymes [BR:
avv01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.2 oxoglutarate dehydrogenase (succinyl-transferring)
RvVAT039_14480 (sucA)
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Gene cluster
GFIT
Motif
Pfam:
E1_dh
OxoGdeHyase_C
Transket_pyr
2-oxogl_dehyd_N
Motif
Other DBs
NCBI-ProteinID:
BCH64232
LinkDB
All DBs
Position
1:complement(1570282..1573278)
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AA seq
998 aa
AA seq
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MARQEANEQFQITSFLDGSNAIYIEQLYARYEDDPNSVSPEWQSFFKALGDNPSDVKKAA
KGASWQRSNWPLTPRTDLVSALDGNWGLVEKAIETKVKGKAETQAAATGKPVSETDVLQA
TRDSVRAIMMIRAYRMRGHLHAKLDPLGIATAVEDYNELSPLSYGFTEADFDRKIFIDNV
LGLEYATVREMIEILERTYCSTLGFEFMHISNPEEKSWIQERIEGPDKGVDFTVEGKKAI
LQKLVEAEGFEQFIDVKYKGTKRFGLDGGESLIPALEQIIKRGGQEGLEEVVLGMAHRGR
LNVLTNVMHKPHRAVFHEFKGGSFKPDEVEGSGDVKYHLGASSDREFDGNKVHLSLTANP
SHLEIVNPVVMGKARAKQDQLAKVWEGDVIPLKERAKVLPLLLHGDAAFAGQGVVAEILG
LSGLRGHRVAGTMHVIINNQIGFTTNPGFSRSSPYPSDVAKMIEAPIFHVNGDDPEAVVY
AAKVATEFRMKFHKPVVVDMFCYRRFGHNEGDEPSFTQPKMYKEIRAHKTVVQVYGDRLI
AEGVITEGDLEKMKADWRANLEQEFEAGQSYKPNKADWLDGVWSGLRAADNADEQRRGKT
AMPMKSLKEIGRKLSTIPDGFKAHRTIQRFMENRAQMIETGEGIDWAMAEALAFGSLVVE
GHKIRLSGQDCERGTFSQRHSVLYDQESEDRYIPLANLAPNQARYEVINSMLSEEAVLGF
EYGYSLARPNALTLWEAQFGDFANGAQVVFDQFISSGERKWLRMSGLVCLLPHGYEGQGP
EHSSARLERWLQMCAEDNMQVANVTTPSNYYHILRRQVKRDFRKPLILMTPKSLLRHKRA
QSTLAEMAGESSFHRLLWDDAEIIKDGPIKLQKDAKIRRVVMCSGKVYYDLLEEREKRGI
DDVYLLRIEQLYPFPAKALINELSRFRNAEMVWCQEEPKNMGAWSFIDPYLEWVLAHIDA
KYQRVRYTGRPAAASPATGLMSKHLAQLQAFLEDALGG
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggcaagaagccaacgagcagtttcagatcacctcgttcctggacggatcgaat
gcgatctatatcgagcagctttatgcgcgttacgaagacgatccgaattcggtatcgcct
gagtggcaatccttcttcaaggcgctgggcgataatccaagcgatgtgaaaaaggcggcc
aagggagcctcctggcagcggagcaattggccgctgacacctcgcaccgatctggtttcg
gcgctggatggtaattggggtctggtcgagaaggccattgaaaccaaggtcaagggcaag
gcagaaacgcaagctgccgccacaggcaagccggtttctgaaaccgatgttttgcaggcg
acccgtgatagcgtgcgcgccatcatgatgatccgcgcatatcgcatgcgcggtcatttg
cacgccaagctcgacccgctgggcatcgctacggcggttgaagattacaacgagctgtca
ccattgtcttacggctttaccgaagccgattttgatcgcaaaatcttcatcgataacgtt
ctggggctggaatatgccaccgtgcgtgagatgatcgaaattcttgagcgcacctattgc
tcgacgctcggtttcgaattcatgcacatctccaatccggaagaaaaatcctggattcag
gagcgcatcgaaggccccgataaaggtgtcgattttaccgtcgagggcaagaaggccatt
ctgcaaaagctggttgaggctgaaggctttgagcagtttatcgatgtgaagtacaagggc
accaagcgctttggtctggatggcggcgaatcgctgatcccggcgctggagcagatcatc
aagcgcggtggtcaggagggtcttgaagaggtcgtgctcggcatggcgcatcgcggccgt
ctgaacgtgctgaccaatgtgatgcataagccgcatcgcgccgtgttccacgagttcaag
ggtggttcgttcaagcctgatgaagttgaaggctccggcgacgtgaagtaccatcttggt
gcctcgtctgaccgcgaattcgatggcaacaaggttcacttgtcgctgacggccaacccg
tcacatctggaaatcgttaaccccgtggtgatgggcaaggcccgcgccaagcaggaccaa
ctggccaaagtctgggaaggcgacgtgattccgctgaaggagcgcgccaaggttctgccg
ctgctgctgcatggtgacgctgcctttgcgggtcagggcgttgtggctgaaattctcggc
ctgtctggtctgcgcggtcaccgcgtggcaggcacgatgcacgtgatcatcaacaatcag
atcggtttcaccaccaatccgggcttctcgcgctcgtcgccttatccatcggatgtggcc
aagatgatcgaagcgccgatcttccatgtgaatggtgatgatccggaagctgtggtttat
gccgccaaggtggccactgaattccgcatgaagttccacaagcctgtggttgtggacatg
ttctgctaccgtcgctttggccataatgaaggggatgagccttcgttcacccagccaaag
atgtacaaggaaatccgcgcccataagaccgttgttcaggtctatggtgatcgtctgatt
gctgaaggcgtgattaccgaaggcgatcttgaaaagatgaaggccgattggcgcgccaat
cttgagcaggaattcgaggctggccagtcctacaagcccaacaaggctgactggctggat
ggcgtctggtccggtcttcgcgccgccgacaatgccgatgaacagcgtcgcggcaagaca
gccatgccgatgaagtccctgaaggagatcggtcgcaagctgtcgaccatccctgatggg
ttcaaggcgcatcgtaccatccagcgcttcatggaaaaccgtgcgcagatgatcgagacc
ggcgagggcatcgattgggcgatggccgaggccttggccttcggttcgctggtcgtcgaa
ggccacaagatccgcctgtctggccaggattgcgagcgcggcactttcagccagcgtcat
tcggtactctacgatcaggaaagcgaagatcgctatattccgctggccaacctggcgcct
aaccaggcccgctacgaagtcatcaattcgatgctgtcggaagaggctgtgcttggtttt
gaatacggctattcgctggcccgcccgaatgccctgaccttgtgggaagcccagttcggt
gacttcgccaacggcgcccaggtggtgttcgaccagttcatctcgtcgggtgaacgcaaa
tggcttcgcatgtccggcctcgtctgccttctgccgcatggctatgaaggtcagggaccg
gaacactcttcggctcgtctggagcgctggctgcaaatgtgcgccgaagacaatatgcag
gtggccaacgtcacgacgccgagcaactattaccatatcctgcgccgtcaggtgaaacgc
gacttccgtaagccgctgatcctgatgacgccgaagtcgctactgcgtcacaagcgggcc
cagtctaccctggcggaaatggcaggtgaaagctcgttccatcgcctgctgtgggatgat
gccgagatcatcaaggacggtccgatcaagctccagaaggatgccaagatccgccgcgtg
gtgatgtgcagtggcaaggtttactatgacctgctggaagagcgcgaaaagcgtggcatc
gatgatgtctacctgctgcgtatcgaacagctctatccgttcccggccaaggcgctgatc
aatgaactgagccgcttccgcaatgcggaaatggtctggtgccaggaagagccgaagaac
atgggggcatggtccttcatcgatccgtacctggaatgggtgctggcgcatatcgacgcc
aagtatcagcgcgtgcgctataccggccgcccggctgccgcctctccagcgacgggtctg
atgtccaagcatctcgcccagttgcaagccttcctggaggacgcacttggcggctga
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