Burkholderia aenigmatica: L3V59_32450
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Entry
L3V59_32450 CDS
T09543
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
baen
Burkholderia aenigmatica
Pathway
baen02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
baen00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
L3V59_32450 (pdeR)
Enzymes [BR:
baen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
L3V59_32450 (pdeR)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS
PAS_4
PAS_9
DUF3612
Motif
Other DBs
NCBI-ProteinID:
UKD14379
LinkDB
All DBs
Position
2:3138849..3140852
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AA seq
667 aa
AA seq
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MDDENDSAVLEAHVGTRSPCWRLGSDSNALELAAVRGLTNVAVALTGEQAACIRALTGVT
SHLVLDIALFGEPVKLHLVGRKIDTTDWAGTACAYSDAESVAGDLSHGLAFAEQVVSEVN
SLVVILDRNGKVQRFNRLCEEVTGKREVDVIGRSAFELFMSPEQGEQSRSNITGFFASNH
SFAVERYINTVNGPRLFQFRNKFVQSGSGVDEQFLICSGIDITEERSAQQRLIELANTDV
LTGLPNRHAISERIHAAIAAETAASRGQVGILFLDLDNFKRVNDHYGHITGDRLLQDVSK
IISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQIILERLRTPIHLGLMEVYTSCSI
GIAMHPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLRKALE
EEQFVLHYQPVVDIATGDVHGVEALIRWQSPDRGLVAPVEFIRFAEESGLIAPLGRWVMR
SAAAQAAAWKAKGLDIRIAVNVSARQLQDMNIVYQLASILDAAGLKPGLLDIELTESCFI
EDEDAANGLMRQFRQLGAEIHLDDFGTGYSSLSQLSRLPLDAIKLDRSFITGIDRNPRSQ
ALVRSVVSLAKALNFAVVAEGVETHAEAEFLKQLDVDHAQGYYYARPMPAQAFEAWLAET
RKLRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgaaaacgatagcgcggtgctcgaggcgcatgtcggtacgcgcagcccctgc
tggcgtctcggcagcgacagcaatgccctcgaactggcggccgtccgcggcctgaccaac
gtcgccgtcgcgctgacgggcgaacaggccgcgtgcatccgcgcgctgaccggcgtcacg
tcgcacctcgtgctcgacatcgcgctgttcggcgaaccggtcaagctccacctcgtcggc
aggaagatcgacacgaccgactgggccggcacggcttgcgcctattccgatgccgaatcc
gtcgcgggcgatctctcgcacgggctcgcgtttgccgagcaggtcgtgtccgaagtgaat
tcgctcgtcgtgatcctcgaccgcaacgggaaggtgcagcgcttcaaccgcctgtgcgag
gaagtgacgggcaagcgcgaggtcgacgtgatcggccgcagcgcgttcgagctgttcatg
agcccggagcagggcgagcagtcgcgcagcaacatcacgggctttttcgcgagcaaccac
tcgttcgcggtcgagcgctacatcaacacggtcaacgggccgcgcctgttccagttccgc
aacaagttcgtgcagagcggcagcggcgtcgacgagcagttcctgatctgctcgggcatc
gacatcaccgaagagcgcagcgcgcagcagcggctcatcgagctcgcgaacaccgacgtg
ctcaccgggctgccgaaccgccatgcgatcagcgagcgcatccacgcggcgatcgccgcg
gagaccgccgcgtcgcgcgggcaggtcggcatcctgttcctcgatctcgacaacttcaag
cgcgtcaacgatcactacgggcacatcaccggcgaccggttgctgcaggacgtgtcgaag
atcatcagcggctgcctgccgtccggcgcgacgctcgcgcggctcggcggtgacgaattc
ctcgtgctgttcgagcacggcacgcggccgctgctcgaagcgaccgcgcagatcatcctc
gaacggctacgcacgccgatccatctcgggctgatggaggtctacacgagctgctcgatc
ggcatcgcgatgcatccgcagcacggcgattcgctcgagacgctgatccgcagcgccgat
accgcgatgtacgtcgcgaaggaagagggcaagcatacgtatcgcgtgttctcgctggag
atgaaccagaaggtcgcgaagtacatgtggctcgacacgaacctgcgcaaggcgctcgag
gaagagcagttcgtgctgcactaccagccggtcgtggatatcgcgaccggcgacgtgcac
ggtgtcgaggcgctgatccgctggcagtcgcccgaccgcgggctcgtcgcgccggtcgag
ttcatccgcttcgcggaggagtcgggcctgatcgcgccgctcgggcgctgggtgatgcgc
agcgcggccgcgcaggccgccgcctggaaggcgaaggggctcgacatccggatcgcggtg
aacgtgtccgcgcggcagttgcaggacatgaacatcgtgtaccagctggcgtcgatcctc
gacgccgcggggctgaagcccggcctgctcgacatcgagctgaccgaaagctgcttcatc
gaggacgaggatgcggccaacggactgatgcgccagttccgccagctcggcgcggagatc
catctcgacgatttcggcaccggctattcgtcgctgtcgcagctgtcgcgcctgccgctc
gacgcgatcaagctcgaccgcagcttcatcacgggcatcgaccgcaatccgcgctcgcag
gcgctggtgcgctcggtcgtgtcgctcgcgaaggcgctgaatttcgcggtggttgcggaa
ggcgtcgaaacgcatgcggaagccgagttcctcaagcagctcgacgtcgatcacgcgcag
ggctactactacgcgcgcccgatgccggcgcaggcgttcgaggcgtggctcgcggagacg
agaaagctcaggctgatcgcctga
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