Bombus affinis (rusty patched bumble bee): 126914576
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Entry
126914576 CDS
T09368
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
126914576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baff03400
]
126914576
DNA repair and recombination proteins [BR:
baff03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
126914576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_22
Motif
Other DBs
NCBI-GeneID:
126914576
NCBI-ProteinID:
XP_050574640
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Position
3:8344608..8350147
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AA seq
1130 aa
AA seq
DB search
MSKVNTLYNYFISPKTPKTPKQSNNKKPDEKPSTPKRPREQWNKAKIPSKGKENIDVKDK
KNVSKDDDDKEEETEEKEPVQPKKRRLIIPDEESGEDSGDEFKPDPEDESEDSDSVSEEV
SESEPLTPSEEESPEKKIKLAKAPRGKREISTMKNTKDAKKESKPQQQNQTKGSDSVTES
WPHLKYDFLQPNKIRDIRRKPPSDPDYDPKTLYVPQDFLNQQTPAMRQWWELKSKHFDCV
LFFKVGKFYELYHMDAVISVNEINLTYMRGEFAHSGFPEIGYGRFSASLIERGYKVARVE
QTENPDMMAQRCSKMTRPTKFDKVVKREICQISSKGTRVYTPQDVEASTANSNYLLSLVE
KCPSGSNKSHYGVCFLDTTIGDFYLGQFEDDRCNSRILTLLAHYPPVHVVYERGNLSQKT
LKILNNTLAACIKEPLLRESQFWSSSTTLKNLHEGEYFKNSDSQFQWPAGLQPYLNENDT
LGLTSADDKELAVHALGGCVYLLKEYLLEQQLLAQGRFKTYTPPDFSNEKSVASNFANNM
VLDAITINNLRIFGEGSLMKTLDRCCTAFGKRLLREWICRPSCRKNVIIERQQAIQELMD
NTEVMQNARSILAGLPDLERLLSKIHAQGNAAKMNNHPDGRAIMFEGQTYSKKKIADFIV
TLNAFEDVLKIVALFEDFKSTIVSRCTKIEPDGEFPSLRESLDYFKTAFDHEEAKKVGCV
VPKRGVDSEYDSVLIELDDVKADAQEYLEKQKKHFGVKVTFHGSDKKRYQIEIPDSQIKK
IGAGYELQSQRKGYKRYYTAETKELLSRQINAEEHRDKVLKDLNRRIFAKFSEKYDMWNM
AVYKLSVLDVLISLAEYALSGDMCIPEVNDGTDKRVFIDIRDGWHPCIISDTFIPNNTLL
GTENSASFMILTGPNMGGKSTLMRQVALLTIMTQIGSYVPASSCCLTLVDRIFTRLGAND
DILAGQSTFLVELSETAAILQHATPYSLVLLDELGRGTSTYDGTAIAASVVNALTKLNCR
TLFSTHYHSLVEDYKNTKEITLAHMACMVENEEQDEVSQETVTFLYKLSEGACPKSYGFN
AALLAGVPSVITNRAHEISKKLEQETNYKHLFTSLCKANGTAIRDLIAAM
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagtgaatacattgtacaattattttatttcgcctaaaactcctaaaactcct
aaacaatcgaataataagaagcctgatgaaaaacctagtacgccgaaaagaccaagagaa
caatggaacaaagcaaagattccaagcaaagggaaagaaaatatagatgtcaaagataaa
aaaaatgtctctaaagatgatgatgataaagaagaggaaactgaagaaaaggaaccggta
cagccaaaaaagcgaagattgattatccctgatgaagagtctggagaagattctggtgat
gaatttaagcctgatccagaagatgaatcagaagattctgattcagtatctgaagaagtt
agtgaaagtgagccactaacaccaagtgaagaggaatctccagagaagaaaataaaattg
gccaaagctcctagaggaaaacgggaaataagtacaatgaaaaataccaaagatgctaaa
aaagaatcaaaaccacagcaacaaaatcaaaccaaaggttcggacagtgttacagaatct
tggccacatttaaagtatgatttccttcaaccaaataaaatacgagatattcgtaggaaa
ccaccaagcgatccagattatgatcctaaaactctttatgttcctcaggatttcttgaat
caacaaactccagccatgagacaatggtgggaattaaaaagcaaacatttcgattgcgtt
cttttctttaaagtaggaaagttttatgaattgtatcatatggatgctgtaattagtgtc
aatgaaattaatcttacatacatgagaggagaatttgcgcattcaggatttccagaaatt
ggatatggtcgtttctcagcaagtctcatagaaagaggctacaaagtggctagggtagaa
caaacagaaaatccagacatgatggcgcaacgttgtagcaaaatgactaggccaacaaag
ttcgacaaagtagttaaacgagaaatttgtcaaataagcagtaaaggtacaagagtatac
actccacaggatgtagaagcatctacggcaaattccaattatttgttatcattagttgaa
aaatgtccatctggttcaaacaaatctcattatggagtgtgtttcttagatactacaata
ggagacttctatctcggtcaattcgaagacgatcgatgtaattctagaatactaacttta
ctcgctcattatccgccggttcatgtggtttatgaacgaggtaatttgtctcaaaagacc
ctaaaaatcttgaacaacactttagcagcgtgtattaaagaaccacttttacgcgaatct
caattttggtcatcttcgactacgttaaaaaatcttcatgaaggagaatacttcaaaaat
tcagactctcagtttcaatggcctgcaggtttacaaccatatcttaatgaaaatgatact
ttaggtttaacttctgctgatgataaagagttagcggtgcatgccttaggtggatgtgta
tacttactcaaagaatatctgcttgaacagcaattattggcacaaggacgttttaaaaca
tatactccgccagatttttcaaatgagaaatctgtggcttcaaactttgcgaataatatg
gttctagatgctattacgattaataatttgagaatattcggcgagggttctctcatgaaa
acactggatcgttgctgtactgcattcgggaagaggttattgcgagaatggatttgcaga
ccatcctgtcgcaaaaacgttataatcgaacgtcaacaagctatacaagaattaatggat
aatacagaggtgatgcaaaatgctcgtagtatattagcaggactccctgatcttgaaaga
ttattaagcaagatccatgcacaaggaaatgcggcgaaaatgaataatcatccagatggc
agagcgattatgttcgagggtcaaacgtattcaaagaaaaagattgcagattttattgtt
actttgaatgcgttcgaggatgttctaaaaattgttgctttgttcgaagatttcaagagt
actatagtaagtcgatgtactaaaatagagccggatggcgagtttccttcattaagagaa
tcattagattattttaagaccgcattcgatcacgaagaagccaaaaaagtaggctgtgtt
gttccaaagagaggagtcgatagtgaatacgactctgttttaatagaattggatgatgta
aaggcagatgcccaagagtaccttgaaaagcaaaaaaagcacttcggcgtgaaagtcacg
tttcatggatcggataagaaacgttatcaaatcgagattccagattctcaaataaagaaa
attggtgccgggtatgagcttcaatcacaaagaaaaggatacaaacgctattacactgcc
gagactaaggaacttttgagtcgacaaataaatgccgaagaacacagagataaagtacta
aaggatttaaacagaagaatatttgcaaaatttagcgagaagtatgatatgtggaatatg
gcggtttataagttgtctgtcttggatgttcttatctctttggcggaatatgctctcagc
ggagatatgtgtataccagaagttaacgatggtacagataaaagggtatttatcgatatt
cgagacggatggcatccatgtattatctccgatacatttataccaaataacactttacta
ggaactgaaaattctgcttcttttatgattcttactggaccgaatatgggtggtaaatca
acattgatgcgtcaggtcgcccttcttactataatgacgcaaattggaagttacgtccct
gcaagttcctgctgtttgacattagtggatcgtattttcacaaggctcggcgcaaatgat
gatattctagctggccagagtacgttcttggtagagttgagcgaaactgctgcgatatta
cagcacgctacgccatactcgctagtgttgcttgatgaattgggtcgtggtacgtcgacg
tatgacggcacggcaatagccgcttcagttgtgaatgcacttacaaaattgaattgccgt
actctattttcgacacattatcattctttggtagaagattataagaacacaaaggaaatt
acattggcccatatggcatgtatggtagaaaatgaggaacaggatgaagtgtctcaggaa
acagtaacatttttgtacaaacttagcgagggagcttgtccgaaatcatatggttttaac
gctgctctattagctggcgtcccatctgtaattacaaacagagcgcatgagatctcaaag
aaactcgaacaagagacaaattataaacatctcttcaccagtctatgtaaggcgaacgga
acagccataagggatctaatcgctgcaatgtga
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