Bombus affinis (rusty patched bumble bee): 126920818
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Entry
126920818 CDS
T09368
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03020
RNA polymerase
baff03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126920818
09124 Replication and repair
03420 Nucleotide excision repair
126920818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baff03021
]
126920818
03400 DNA repair and recombination proteins [BR:
baff03400
]
126920818
Enzymes [BR:
baff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126920818
Transcription machinery [BR:
baff03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
126920818
DNA repair and recombination proteins [BR:
baff03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
126920818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
126920818
NCBI-ProteinID:
XP_050587517
LinkDB
All DBs
Position
10:10642276..10651125
Genome browser
AA seq
1902 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSAERKPGHGGCGRYQ
PNLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAILRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFEVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGTAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPNYSPSPGYSPTSPSYSPTSPSYSPTSPSYSPTSSS
YSPTSPSYSPTSPSYSPTSPSYSPSPSYSPTSPSYSSTSPSYSPTSPSYSPSSPNYTPAS
PSYSPTSPSYSPSSPQYSSASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPTYS
PTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTS
PTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atggccacgtccgattccaaagcgcctctgcgaaccgtaaaaagagttcaattcggcatt
ctttcacccgatgaaatacgtcggatgtcggtcacagatggcggcattcgatttccagaa
actatggaaggtggccgtccaaagcttggtggacttatggatcctagacaaggtgtcatt
gatagaaattctagatgtcagacatgtgctggtaatatgacagaatgtccaggacacttt
ggtcatatagatttagcaaaaccagtttttcatgttggtttcataacaaagacaataaaa
attttgagatgtgtatgtttttattgttcaaaacttcttgtcagtccacacaatccaaaa
atcaaagaaattgttatgaaaactaaaggtcagccacgaaaacgtcttacttttgtttat
gatttatgtaaaagtaaaaatatttgtgagggtggtgatgaaatggatattaacaaagag
aatcaagaacaacaatctgcagagagaaaacctggacatggtggatgtggtagatatcaa
ccaaatcttcggagatctggattagatgttactgcagaatggacacacgtaaatgaagat
tcacaggaaaaaaagatggcactcactgcagaaagagcttgggaaattttaaagcacatt
acagatgaagaatcatttatccttggcatggatccgaaatttgcacggccagattggatg
gtagtaactgttttgcctgttccacctctatcggtcagaccagcagttattatgtatggt
tctgccaagaatcaagatgacttaacacataagcttgctgatattataaaagcaaataat
gaattaatcagaaatgagcaagcgggagcagcagcacatgtgatatcagaaaatataaaa
atgttacaatttcatgtagcaacgttagttgataacgatatgcctggcatgccacgagct
atgcagaaatcaggcaaacctctaaaagctataaaagcgagattgaaagggaaggaaggg
agaataagaggaaacttgatgggtaaacgtgttgacttttctgctcggactgttattact
cctgatccaaatttgcgaattgatcaggtcggtgtacctcggagtattgctcagaattta
acattccccgaaattgtcacaccttttaatatcgataaaatgcaagaactcgttagacgt
ggaaactcacaatatccaggtgctaagtatatcgtcagagataacggggaaagaatcgat
ttaaggttccacccgaaaccatccgatttacatctacaatgcggatacagagtggaacgt
cacattcgggatggtgacctagtaattttcaatcggcaaccaacactacacaagatgagt
atgatgggtcatagggtaaaagtgttgccatggagtacattccgtatgaatcttagttgc
acgtctccttataatgccgattttgacggcgacgagatgaatttacacgttccgcagtca
atggagactcgagcagaagtagaaaacattcatgtaacaccgcgtcaaattattactccc
caagctaataaaccagtcatgggtattgtacaggacacgcttactgctgtaagaaaaatg
actaaaagagacgttttcatagaaaaggaacagatgatgaatatccttatgttcttaccc
agttggaatggcaaaatgcctcagccatgcatattaaaaccaaagcctctatggactggt
aaacaaatcttttccttgatcataccaggcaacgtgaatatgataaggactcacagtaca
catccagatgaagaagacgatggcccatacaaatggatttcacctggtgataccaaagtc
atggtagaacacggagaacttgttatgggtatactctgtaagaagaccttgggtacatct
gctggatctttgcttcacatttgtatgttggaattaggacatgaagtttgcggacgattt
tacggaaatattcaaactgtaattaataattggttactactagaaggtcactcgatcggt
attggagacaccattgccgatccacagacttatttggaaattcaaaaagccattaggaag
gctaaagaagacgtgatagaagtgattcaaaaagctcacaacatggaattggaacctact
cctggtaataccttgaggcaaactttcgaaaatcaagtaaacagaattttaaacgacgct
cgtgataagactggtggttctgctaagaaatctttgactgaatacaacaacctaaaggct
atggtagtatcaggatcaaaaggatctaatattaacatctctcaggttattgcttgtgtc
ggtcagcaaaacgtagaaggtaaacgtatcccgtttggttttcgtaaaagaacattgcca
cattttattaaggacgattatggtccggaatccagaggattcgttgaaaactcgtacctt
gctggtttgacgccatctgagttttatttccacgctatgggaggtcgtgagggtcttatc
gatactgccgtaaaaactgcagaaactggttacattcagcgtcgtttgataaaagctatg
gagtctgtaatggtacattatgatggtacagtcagaaactctgtcggtcaacttatccaa
ttgcgttatggcgaggatggtctatgcggtgaaaccgttgaatttcagaatttgcctact
attaaattgagtaataaagcatttgaaaagaagttcaagttcgatccaaccaatgaacga
tatcttcgtcgtatctttaacgaagatatagttagagaaatgatgggatctggtgaagtc
atatccgaactagaaagagaatgggaacaattgaacaaggatcgtgctatacttagagaa
attttccctagtggagaatcaaaagttgtactgccttgtaatttacaaagaatgatttgg
aatgtacaaaagatttttcatataaataagcgcgcacctactgatcttagtcctatgagg
gttatacagggtgtaaaggatcttttggataaatgtatcattgtggctggtgatgataga
ctcagcaaacaggctaatgaaaatgccacattgctattccagtgcttagtgagatctaca
ttgtgtacaaaatgtgtttctgaagaatttcgattatccagtgaagcctttgaatggctt
attggagaaattgaaaccagattccaacaagcacaggtatcacctggagaaatggtaggc
gctttagctgcacaatcacttggtgaacctgcaacccagatgacactgaacactttccat
tttgctggtgtatcgtcgaaaaatgtaacccttggtgtacctagattgaaggaaattata
aacatcagtaagaaaccaaaggctccgtcgttgaccgtatttttgacgggagctgcagca
agagatgccgagaaagcaaagaatgtactttgtcgattggaacacaccacactgaggaaa
gttacagcaaatactgcgatctattacgatccagatccacaaaataccgtaatagcggaa
gatcaagaattcgtcaacgtttactatgaaatgcctgattttgatccgaataaaatatca
ccatggttacttcgaattgagttggatcgcaagagaatgactgataagaaattaactatg
gaacaaattgcagaaaaaattaacgcaggcttcggtgatgatttgaactgtatttttaat
gatgataacgctgagaagttagttctacgaattaggataatgaacagtgacgataacaag
tttcaagatagtgaggaagagactgtagataaaatggaggatgatatgttccttcgatgt
attgaagcaaatatgcttagcgacatgacattacagggtatcgaagcaataggaaaagtg
tacatgcatttgcctcaaactgatgctaagaaacgtatagttattacagaaactggcgaa
ttcaaagcaatagcagaatggttattggaaacggacggtacgagtttgatgaaagtattg
agtgaaagagatgtcgatccagttagaacatttagcaacgatatttgcgagatatttgaa
gtactgggtatagaggcagtgaggaaatcggtagagaaagaaatgaatgctgttttgcaa
ttttacggcctttatgtaaactatcgtcatcttgctttgctttgtgacgtaatgactgct
aaaggacatttgatggctataactcgtcacggaattaacagacaagacacaggtgctctt
atgagatgttccttcgaagaaacagtggacgttttattagatgcagcatctcatgcggaa
gtagatccaatgagaggagtatctgaaaacattattatgggacaacttccacgtatagga
acaggatgttttgatttgttactggatgctgagaaatgtaaagctggtattgaaatacca
atggcagtgggtgctggtgtaatgggaactgctggaatgttcttcggcagtgttgctacc
ccaagcatgagtcctcaaatgacaccttggatgggcgccacacctggttatggcgcttca
agtatgtcacctgcattgggtagtggcatgacaccaggaggagcatgcttctccccatct
ggagcatcagatgcatcaggactatctcctgcatactctgcgtattcaccacaacccgga
agtccaggaagcccaggtcctagtatgagtccatacccaatgtcaccagcaggtggcgct
tcaccaagttattcacctacctctcccgcctacttgccaacatcgccaagtataacacca
tcgagtcccaactattcacctacaagccctacttactcacccactagtccaaattactcg
ccaacgagtccaagttattcaccaacgagtccgagctattcaccaacgtcaccaagttat
tcaccaacaagtccaaactactcgccatcaccaggttattcaccgacaagtccaagttac
tcaccaactagtccaagttattcaccaacaagtccgagttactcgccaacaagttcaagc
tattcaccaacgagtccaagttactctccaacaagtccaagctattcaccaacgtcgcca
agctactcaccgagtccatcgtactcgccaacgtcaccaagttattcatcaaccagtcca
agttactcaccaaccagtccaagctattcaccgagttcaccaaattatacgcctgcctcg
ccatcttattctccaacaagtccaagttattcgccaagttctccacaatattcatcagct
agtccaagctactctccgagtagtccaaaatattctccgacaagtccgtcgtattcgcct
acgtcgccgtcgttcgctggaacctccccacagtacacaccagcaagtccgacgtattct
ccaacgagtccaacttattctccaacgagtccatcatactcacccagttcaccgcaacac
acggcgtcaggaagcacgagatattcgcctagcagtccaaattattcccctactagtcca
acatattcgcctacgagtcctcaatattcaccgtcgagtactaaatactcgcctaccagc
ccaacgtatacaccaaccagtccaagttactcaccaacaagtccaacatattcgccacca
gtgccagggtattcgccaacgagtcccacgtattccccggcgtcaccagcctacgaaaca
gacgattaa
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