KEGG   Bombus affinis (rusty patched bumble bee): 126925574
Entry
126925574         CDS       T09368                                 
Name
(RefSeq) protein CLP1 homolog
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
baff  Bombus affinis (rusty patched bumble bee)
Pathway
baff03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:baff00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    126925574
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:baff03019]
    126925574
Enzymes [BR:baff01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     126925574
Messenger RNA biogenesis [BR:baff03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     126925574
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N CbiA ATP_bind_1 AAA_16 AAA_22 MMR_HSR1 nSTAND3 CTV_P13
Other DBs
NCBI-GeneID: 126925574
NCBI-ProteinID: XP_050597227
LinkDB
Position
16:complement(2494423..2496246)
AA seq 422 aa
MTDEKTQIQEFKLDPDCELRFEVETKNEKVSLELKSGLAEVFGTELVKGKKYEFTAGAKV
AVFTWQGCTVELVGKTDVSYVAKETPMGLYLNCHAAMERLREAAEKEDTRGPITMVVGPC
DVGKSTLCRLLLNYAVRMGRRPIFVDLDVGQGHIAIPGTVGALLVERPSNVVDGFSQQAP
LVFHFGHKTPQANVALYNLLVTRLAEVCSDRLQANKKARVSGIVINTCGWVKGDGYKLLT
HAAQAFEVDAILVLDQERLYNELVRDMPDFVKVVFLPKSGGVVERSQTQRTEARDQGVRE
YFYGSRTPLYPHSFEVKWSEARLYKIGAPVLPASCMPLGMKAEDNLTKLVAVTPGPNLLH
HLLSVSFADSPEDDVVQTNVAGFVCVTNVDVDRQTFTVLSPQPRPLPNTVLLLSDIQFMD
SH
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgacagacgaaaaaacgcaaatacaggaatttaaattagatccagattgtgaattacga
tttgaagttgaaacaaaaaatgaaaaagtttcgttagagttaaagagtggattagctgaa
gtttttggtacagaattagtgaaaggcaaaaaatatgaatttactgctggtgctaaagta
gctgtatttacttggcaaggttgtacagtagagttagttggaaaaactgacgttagttat
gtagccaaagagaccccaatgggtctttatttaaattgtcatgctgcaatggaaagactc
agggaagctgcagagaaagaagacactaggggtcctataacaatggttgttggtccttgt
gatgtaggaaaatcaactctatgtagacttttattaaattatgcagttaggatgggtcgt
aggccaatttttgtagacttggatgttggtcaaggtcatatagcaataccaggtactgtt
ggagcactattagttgaacgtccatcaaatgttgttgatggtttcagtcagcaggcacca
ttagtctttcactttggacataaaactccacaagctaatgttgctctttataatcttctt
gtaacacgcctcgcagaagtttgttctgatagacttcaagcaaataaaaaagccagagtt
tcaggaatagtaataaacacttgtggttgggtaaaaggagatggatataaattgttgaca
catgctgctcaggcttttgaagtagacgcaattctagtattggatcaggagagattgtac
aatgaacttgttagagatatgccagactttgttaaagttgtattccttccaaaaagtggt
ggagttgtggaaagaagtcaaactcaaaggacagaagccagagaccaaggtgtcagggaa
tatttctatggttctaggacaccgctttatccacacagttttgaagtgaaatggagtgag
gctagattatacaaaattggagctccagtgcttcccgcatcttgtatgcctcttggaatg
aaggcagaagataatttaacaaaattagtagctgttacacctggaccaaatcttcttcat
catctattatctgtttcatttgctgattcaccagaagatgacgtagtgcaaactaatgtg
gctggatttgtctgcgtaaccaatgttgatgttgacagacaaacatttacagttctgagt
ccacagccaagaccattgccaaatacagttttattactttcagatatacaatttatggat
agtcattaa

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