Burkholderia ambifaria AMMD: Bamb_5285
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Entry
Bamb_5285 CDS
T00398
Name
(GenBank) diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Bamb_5285
Enzymes [BR:
bam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
Bamb_5285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS
PAS_4
PAS_9
Motif
Other DBs
NCBI-ProteinID:
ABI90832
UniProt:
Q0B4U1
LinkDB
All DBs
Position
2:2326301..2328304
Genome browser
AA seq
667 aa
AA seq
DB search
MDDENDSAVLEAHVGTRSPCWRLGSDSNALELAAVRGLTNVAVALTGEQAARIRALTGVT
SHLVLDLALFGDTVTLHLVGRKVDTSNWAGTASAYSDTASVATDLSHGLAFAEQVVSEVN
SLVVILDRNGMVQRFNRLCEEVTGKREVDVIGRSAFELFMSPEQGAQSRSNITGFFASNR
SFAVERYINTVNGPRLFQFRNKFVQSGSGADEQYLICSGIDVTEERNAQQRLTELANTDM
LTGLPNRHAISERIGAALAADRTDMRGQVGILFLDLDNFKRVNDHYGHITGDRLLQDVST
IISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATSQIILERLRTPIHLGLMEIYTSCSI
GIAMYPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLRKALE
EEQFVLHYQPVVDLASGDVRSVEALIRWQSPDRGLVAPIEFIHFAEESGLIAPLGRWVMR
TAAAQAAAWKAKGLGVRVAVNVSARQLQDMNIVHQFASILASAGLKPSLVDIELTESSFI
EDEETAHELMKEFRQLGAKIHLDDFGTGYSSLSQLSRLPLDSIKLDRSFITGIDRNPRSQ
ALVRSVVSLAKALSFAVVAEGVETPGEAEFLKQVDVDHAQGFYFARPMPAQAFEGWLAET
RKLRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgaaaacgatagcgcggtgcttgaagcgcacgtcggtacgcgcagcccctgc
tggcgtctcggcagcgacagcaatgcgctcgagctggcggccgtccgcggcttgaccaac
gtcgcggtggcgctgaccggcgagcaggccgcgcgaattcgcgcgctcaccggtgtcacg
tcgcacctcgtgctcgaccttgcgctgttcggcgacacggtcaccctccatctggtcggc
cgcaaggtcgacacgtcgaactgggccggcacggcgtccgcctattccgataccgcgtcg
gtcgcgaccgacctctcgcacgggctcgcgttcgccgagcaggtcgtgtccgaagtgaat
tcgctcgtcgtgatcctcgaccgcaacggcatggtgcagcgcttcaaccgcctgtgcgag
gaagtgacgggcaagcgcgaggtcgacgtgatcggccgcagcgcgttcgagctgttcatg
agccccgagcagggcgcgcagtcgcgcagcaacatcaccggctttttcgcgagcaaccgt
tcgttcgcggtcgagcgctacatcaacacggtcaacgggccgcgcctgttccagttccgc
aacaagttcgtgcagagcggcagcggcgccgacgagcagtacctgatctgctcgggcatc
gacgtcaccgaggagcgcaacgcgcagcagcggctcaccgaactcgcgaacaccgacatg
ctgaccggcctgccgaaccgccacgcgatcagcgagcgcatcggcgccgcgctggccgcg
gatcgcaccgacatgcgcggccaggtcggcatcctgttcctcgatctcgacaacttcaag
cgcgtcaacgatcactacgggcacatcaccggcgatcgcctgctgcaggacgtgtccacg
atcatcagcggctgcctgccgtccggtgcgacgctcgcgcggctcggcggcgacgaattc
ctggtgctgttcgagcacggcacgcggccgctgctcgaagcgacctcgcagatcatcctc
gaacggctgcgcacgccgatccacctcgggctgatggagatctacacgagctgctcgatc
ggcatcgcgatgtatccgcagcacggcgattcgctcgaaacgctgatccgcagcgccgac
accgcgatgtacgtcgcgaaggaagagggcaagcatacgtaccgcgtgttctcgctggag
atgaaccagaaggtcgcgaagtacatgtggctcgacacgaacctgcgcaaggcgctcgag
gaagagcagttcgtgctgcactaccagccggtcgtcgacctcgcgagcggcgacgtgcgc
agcgtcgaggcgctgatccgctggcagtcgcccgatcgcgggctcgtcgcgccgatcgag
ttcatccacttcgccgaggagtcggggctgatcgcgccgctcggacgctgggtgatgcgc
accgcggcagcgcaggccgccgcatggaaggcgaaggggctcggcgtgcgggtcgcggtg
aacgtgtccgcgcggcaactgcaggacatgaacatcgtccatcagttcgcatcgattctc
gccagcgcggggctgaagccgagcctcgtcgacatcgagctgacggaaagcagcttcatc
gaggatgaggaaacggcgcacgagctgatgaaggaattccgccagctcggcgcgaagatt
cacctcgacgatttcggcaccggctattcgtcgctgtcgcaactgtcgcggctgccgctc
gattcgatcaagctcgatcgcagcttcatcacgggcatcgatcgcaatccgcgctcgcag
gcgctggtgcgctcggtcgtgtcgctcgcgaaggcgctgagtttcgcggtcgtcgccgaa
ggcgtcgagacgccgggggaggcggaattcctgaagcaggtcgacgtcgaccacgcgcag
ggtttctacttcgcgcggccgatgccggcccaggcgttcgagggctggctcgcggaaacg
agaaagctcaggctgatcgcctga
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integrated database retrieval system
