Burkholderia anthina: JFN94_20435
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Entry
JFN94_20435 CDS
T07672
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
bann
Burkholderia anthina
Pathway
bann02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
bann00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
JFN94_20435 (pdeR)
Enzymes [BR:
bann01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
JFN94_20435 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS
PAS_9
PAS_4
Motif
Other DBs
NCBI-ProteinID:
QQK06219
UniProt:
A0A7T6VLN2
LinkDB
All DBs
Position
2:934175..936178
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AA seq
667 aa
AA seq
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MDDENDSAVLEAHVGTRSPCWRLGSDSNALELAAVRGMTNVAVALTAEQAARVRVLTGVT
SHLVLDITLFGNAISLHLVGRKVDTKDWAGTASAYSDTASVASDLANGLAFAEQVVSEVN
SLVVILDRNGMVQRFNRLCEEVTGKREVDVVGRSAFELFMSPEQGEQSRHNITGFFASNH
SFAVERYINTVNGPRLFQFRNKFVQSGSGVDEQFLICSGIDITEERNAQQRLSELANTDM
LTGLPNRHAISERIRGALAMDRTDMRGQVGILFLDLDNFKRVNDHYGHITGDRLLQDVSA
IISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQIILERLRTPIHLGLMEVYTSCSI
GIAMYPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSQEMNQKVAKYMWLDTNLRKALE
DEQFVLHYQPVVDIATGDVHGVEALIRWQSPDRGLVAPIEFIRFAEESGLIAPLGRWVMR
TAAAQAAAWKAKGLGVRIAVNVSARQLQDMNIVHQFASILDGAGLKPSLLDIELTESSFI
EDEESAHQLMKEFRQLGAEIHLDDFGTGYSSLSQLSRLPLDSIKLDRSFITGIDRNPRSQ
ALVRSVVSLAKALSFSVVAEGVETHEEAEFLKQIHVDHAQGYYFARPMPAQAFEAWLAET
RKLRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgaaaacgatagcgcggtgcttgaggcgcacgtcggtacgcgcagcccctgc
tggcgtctcggcagcgacagcaatgcactcgaactggccgccgttcgcggcatgaccaac
gtcgcggtcgcgctgaccgccgagcaggctgcgcgggttcgcgtgctgaccggcgtcacg
tcgcacctcgtgctcgacatcacgctgttcggcaatgcgatcagcctccatctggtcggc
aggaaggtcgatacgaaagactgggccggcacggcctccgcctattccgataccgcgtcc
gtcgcgagcgatctcgcgaacgggctcgcgttcgccgagcaggtcgtgtccgaagtgaat
tcgctcgtcgtgattctcgaccgcaacgggatggtgcagcgcttcaatcgcctgtgcgag
gaagtgacgggcaagcgcgaggtcgacgtggtcggccgcagcgcattcgaattgttcatg
agccccgagcagggcgaacagtcgcgccacaacatcaccggcttcttcgcgagcaaccat
tcgttcgcggtcgagcgttacatcaacacggtcaacgggccgcgcctgttccagttccgc
aacaagttcgtgcagagcggcagcggcgtcgacgagcagttcctgatctgctcgggcatc
gacatcaccgaggagcgcaacgcgcagcagcggctcagcgaactcgcgaacaccgacatg
ctgacgggtttgccgaaccggcatgcgatcagcgagcgcatccgcggggcgctcgcgatg
gaccgcaccgacatgcgcgggcaggtcggcatcctgttcctcgatctcgacaacttcaag
cgcgtcaacgatcactacggccacattaccggcgaccgcctgttgcaggacgtgtccgcg
atcatcagcggctgcctgccgtccggcgcgacgctcgcgcggctcggcggagacgaattc
ctggtgctgttcgaacacggcacgcggccgctgctcgaagcgaccgcacagatcatcctc
gagcggctgcgcacgccgatccacctcgggctgatggaggtgtacacgagctgctcgatc
ggcattgcgatgtatccgcagcacggcgattcgctcgagacgctgatccgcagcgccgac
accgcgatgtacgtcgcgaaggaagaaggcaagcacacgtatcgcgtgttctcgcaggag
atgaaccagaaggtcgcgaagtacatgtggctcgacacgaacctgcgcaaggcgctcgag
gatgagcagttcgtgctgcactaccagccggtcgtcgatatcgcgaccggcgacgtgcac
ggcgtcgaggcgctgatccgctggcagtcgcccgatcgcgggctggtcgcgccgatcgag
ttcatccgtttcgcggaggagtcggggctgatcgcgccgctcgggcgctgggtgatgcgc
accgcggccgcgcaggccgctgcgtggaaggcgaaggggctcggcgtgcggatcgcggtg
aacgtgtccgcgcggcagttgcaggacatgaacatcgtccaccagttcgcgtcgattctc
gacggcgcgggactcaagccgagcctgctcgacatcgagctcaccgaaagcagcttcatc
gaggacgaggaatcggcgcatcagctgatgaaggaattccgccagctcggcgcggagatc
catctcgacgatttcggcaccggctattcgtcgctgtcgcagttgtcgcgtctgccgctc
gattcgatcaagctcgatcgctccttcatcaccggcatcgatcgcaatccgcgctcgcag
gcgctggtgcgctccgtcgtgtcgctcgcgaaggcgctgagtttctcggtggtcgccgaa
ggcgtcgagacgcacgaggaagccgaattcctgaagcagatccacgtcgatcacgcgcag
ggctactactttgcgcgaccgatgccggcccaggccttcgaggcgtggctcgcggagacg
agaaagctcaggctgatcgcctga
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