Babesia bigemina: BBBOND_0106260
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Entry
BBBOND_0106260 CDS
T08062
Name
(RefSeq) pre-mRNA cleavage complex II protein Clp1, putative
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
bbig
Babesia bigemina
Pathway
bbig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbig00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
BBBOND_0106260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbig03019
]
BBBOND_0106260
Enzymes [BR:
bbig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
BBBOND_0106260
Messenger RNA biogenesis [BR:
bbig03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
BBBOND_0106260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
nSTAND3
AAA_16
KTI12
CbiA
AAA_28
AAA_29
Sigma54_activ_2
Clp1
AAA_18
Motif
Other DBs
NCBI-GeneID:
24562858
NCBI-ProteinID:
XP_012766503
UniProt:
A0A061D2M7
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All DBs
Position
I:1355792..1357679
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AA seq
535 aa
AA seq
DB search
MASLPIRTYTLAPFSELRIVSHDSHDGIPVLPSVKLLNTPAAAADLLPNMRGTAEIYGRE
LAPDVDRTIEEGEKLAVFTWVGCSVQVKGMVEQEYDGEDHAMKEYLNVANVLNAERELAS
VKRTQGPRVLITGAPSSGKSTVAMLLCNYALRGGWTPVFVEADPRASTDKRQIQFYPGTI
GATVVTNAAEMDSKNPLVYFYGYSGAQENEKLYLQISKSMGASLDAMMENSSQTQPHSRR
SDEVSDMGKYIAASGMIINAPYSANRDLIVKLAEIYSVSLILVIDSPSVRQDLVRTFAAI
RDGQRAATPLTGVRGDVAPGALGNLAFQETPEQKAHTQSDLNETQTAFDGADASDDKATR
EVTVLAINKLEGVVPVDLERVKYLNSRCWKRYFQRTNAGEMHVIRFPMENVKLVVLETSV
ALSKDALPTDDTGYMTRNEVYASMWNGDPFSLTNGVLGIPAADDATLIPYCNLLGFVLVR
KVEERAQQPDAETDGEPAPRTYVMEVLCPAVYSPSSLPAYLLVAGNQRVMRWQTI
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgctgccgattcggacttacacattggctcctttcagcgagctaaggattgtc
agtcacgactcacatgatggcatacctgtgctcccttccgtcaagctgcttaacacgccg
gcggctgcggcggaccttctaccgaatatgcgcggtactgcggaaatctacggccgagaa
cttgctcctgatgtagatcgcacgatagaggaaggcgaaaaactcgccgtgtttacgtgg
gtcgggtgttccgttcaggtcaaaggcatggtggaacaggagtacgacggcgaggatcac
gctatgaaggagtatcttaatgttgccaacgtgctgaatgcggagagggaattggcctca
gtgaaaaggacccaaggaccaagggttttaatcaccggcgcgccatctagtggcaaatca
actgtggcgatgctattgtgcaactatgcactgcgaggtggttggacacccgtttttgtc
gaggctgacccgagagcatcaacggacaaacgtcaaatacaattttacccaggcaccatc
ggagccacggtcgtcacgaacgcagcggaaatggattctaagaatccattggtgtatttt
tatggttactccggcgcgcaggagaacgaaaaactctatcttcaaatttcgaaatcgatg
ggagcctcattggacgccatgatggagaactcctcccagacccaaccccatagcagacgc
tcagacgaggtctcggacatgggcaaatacatcgcagcttcaggcatgatcatcaacgcg
ccgtattcggcaaaccgcgacctgatcgtaaaactcgccgaaatatactcggtgtcgctt
atactcgtcatagacagtccttcagtgcgtcaggacctggtccgcacgttcgccgccatc
agggatggtcagcgcgccgccactccgcttacaggcgttcgaggggacgtggccccggga
gcgttgggcaaccttgcattccaggaaacaccagaacagaaggcacatactcagtcggat
ttaaatgagacgcaaactgctttcgatggtgccgatgcctccgatgacaaggcgacgagg
gaggtgacggtgctggcgataaacaagctggagggcgtcgtgcccgtcgacctggagagg
gtcaagtacctcaacagcaggtgctggaaacggtactttcagcgtacaaatgcaggtgaa
atgcacgtgatccggtttccgatggaaaacgtcaaactcgtggtattagagacttccgtc
gcactgtccaaggacgcgctgcctacggacgacacggggtacatgacgcggaacgaagta
tacgcgtcgatgtggaacggagatccgttttcactaacgaacggtgtacttggcatacct
gcagctgacgatgccacgcttataccctactgcaatctgctcgggttcgtactggtgaga
aaagttgaggagagggcgcagcagcctgacgcggaaacggatggtgagccggccccacgc
acctacgtgatggaggtgctctgccccgctgtatactcaccttcgtctctccctgcgtac
cttctggtcgcggggaaccaacgagttatgaggtggcagaccatatga
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