Bubalus bubalis (water buffalo): 102393214
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Entry
102393214 CDS
T05912
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X2
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03030
DNA replication
bbub03410
Base excision repair
bbub03420
Nucleotide excision repair
bbub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102393214 (LIG1)
03410 Base excision repair
102393214 (LIG1)
03420 Nucleotide excision repair
102393214 (LIG1)
03430 Mismatch repair
102393214 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbub03032
]
102393214 (LIG1)
03400 DNA repair and recombination proteins [BR:
bbub03400
]
102393214 (LIG1)
Enzymes [BR:
bbub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102393214 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
102393214 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
102393214 (LIG1)
DNA replication proteins [BR:
bbub03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
102393214 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
102393214 (LIG1)
DNA repair and recombination proteins [BR:
bbub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
102393214 (LIG1)
NER (nucleotide excision repair)
Other NER factors
102393214 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
102393214 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
102393214
NCBI-ProteinID:
XP_006067486
EnsemblRapid:
ENSBBUG00015017893
LinkDB
All DBs
Position
18:complement(54326137..54353551)
Genome browser
AA seq
959 aa
AA seq
DB search
MERLGPQPEGLLVTSPTLLCGCRNRKLVTRGEEEWGENSDTVMQRSIMSFFQPKKEGKAK
KPEKETSKSIRETESPPKVALKERNRVVSEGDSPVKRPGRKATRVLGSEGEEEEEEAPTT
PRSQKPASDSPQASPPSPVTLPESSPSRSKPSPAVASPSGIPKRRTARKQLPKRTFQDVL
KEQGEDEDPETKKKKEEEEAETPTESLPEPEGGDKEEVESGDQPTTPPEPQKTSTESPTE
SVSEPGVTVKQEPQENDQAQPPPKTPKTLSSFFSPRKPAVKKEAKEEGPGALRKDETKGH
LDPPSYNPAKNNYHPIEDACWKAGQRVPYLAVARAFEKIEEVSARLRMVETLSNLLRSVV
ALSPADLLPVLYLSLNRLGPPQQGLELGIGEGILLKAVAQATGRQLESVRAEVAEKGDVG
LVAESSRSTQRLVLPPPALTAAGVFTKFRDIAQLAGSASTTKKIDVIKGLFVACRHSEAR
FIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQECPPAVVDAGKGKTAEARKTWLEEQG
MILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEE
AAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIISRIPKIKLPSVTSFILDT
EAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPLSRRRQ
LLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSH
NWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGRYGGFLLASYDEESEEFQAICKLGTGF
SDEELEEHHQRLQALVLPTPRSYVRADGAVAPDHWLDPSDVWEVKCADLSLSPIYPAARG
LVDSEKGISLRFPRFIRVREDKKPEQATTSAQVAGLYKKQSQIQNQQGAEPDSEQEEFY
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggagaggcttggaccgcaacccgaaggactcctggtgaccagtcccactctactctgc
ggttgcaggaacaggaaactggtgaccagaggagaggaggagtggggagagaattctgat
accgtcatgcagcgaagtatcatgtcatttttccagcccaagaaagagggcaaagcaaag
aagccagagaaggagacatccaagagcatcagagaaacggagtcccctccgaaggtggcg
ctgaaggagcggaatcgagtggtgtctgagggtgactctccagtgaagaggccggggagg
aaggcgacccgggtcctgggcagcgagggcgaggaggaggaagaggaagcccccaccacc
cccagaagccagaagcctgcttcagactctccacaggcctcgcctcccagtcctgtcaca
ctgcctgagagcagcccttcccgctccaaaccctccccagcggttgcatccccatcaggg
atcccaaagcgtcgcacggcccggaagcagcttcccaaacggacatttcaggatgtcctg
aaagagcagggcgaggacgaggacccagaaactaagaagaagaaggaggaagaagaagcg
gagacaccaacagaaagcctcccagagcctgaagggggcgacaaggaggaagtggaaagc
ggggaccagcccacgacgccccctgagccccagaagacctccacagagtccccgacagaa
agcgtttcagagcctggggtgacggtgaagcaggaaccacaggagaatgaccaggctcaa
ccgccccccaaaactccaaagaccctcagcagtttcttctccccccggaagccagctgtc
aaaaaagaagcgaaagaagaaggacctggtgctctgagaaaggacgagaccaagggacac
ctggacccaccgagctacaatcctgccaagaacaactaccaccccatcgaagatgcctgc
tggaaggcgggccagagggttccttatctggctgtggcccgggcgttcgagaagatcgag
gaggtctctgctcggctccggatggtggagacgctgagcaacctgctgcgctccgtggtg
gccctgtcacctgctgacctcctgcccgtcctctacctgagcctcaaccgcctggggccg
ccccagcagggcctggagctcggcatcggagagggcatcctcctcaaggcagtggcccag
gccacgggtcggcagctggagtccgtccgggccgaggtggccgagaagggtgatgtgggg
ctggtggccgagagcagccgcagcacccagaggcttgtgctgcccccgcccgcgctcact
gccgccggcgtcttcaccaagttccgggacatcgcgcagctggcaggcagcgcttccaca
accaagaagatcgatgtcatcaaaggcctctttgtggcttgccgtcactcagaggcacgt
ttcattgccagagccctgagtggacggctgcgccttgggctggctgagcagtcagtgttg
gcggccctcgcccaggctgtgagcctcacaccgcccggtcaagaatgcccccccgccgtg
gtggacgccggtaagggcaagacggcagaagccagaaagacgtggctggaggagcaaggc
atgatcctgaagcagactttctgtgaggtacctgacctggaccggattgtccctgtgctt
ctggaacatggcctggagcggctcccagagcactgcagactgagcccaggggttcccctg
aaaccaatgttggcccaccccacccggggcgtcagtgaggtcctgaagcgctttgaggag
gcagctttcacctgcgagtacaaatacgacgggcagagggcacagatccacgttctggaa
ggcggggaggtgaagatcttcagcaggaatcaggaggacaatactggaaggtaccccgac
attatcagccgcatccctaagattaaactcccatcggtcacatccttcatcctagacaca
gaagctgtagcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaggtggacgcggcggagatccaggtgcaggtgtgtctgtatgccttc
gatctcatctacctcaacggagagtccctggtacgtgagcccctctcccgacgccggcag
ctgctccgggagaacttcgtggagacggagggcgagttcgtctttgccacctccctggac
accaaggacacggagcagattgccgagttcctggagcagtcagtgaaagactcctgcgag
gggctgatggtgaagaccctggacgtggacgccacctacgagatcgccaagaggtcacac
aactggctcaagctgaagaaggactacctcgagggtgtgggcgacaccctggacctcgta
gtgattggtgcctacctgggcaaggggaagcgggccggccggtacgggggcttcctgctg
gcctcgtacgacgaggagagcgaggagttccaggccatctgcaagctcggaactggcttc
agtgacgaggagctggaagagcaccaccagaggctccaggccttagtgctgcccacccca
cgctcctacgtccgggccgatggcgcggtggcccccgaccactggctggaccccagcgac
gtgtgggaggtgaagtgcgcggacctctccctgtcccccatctaccctgcggcccggggc
ctggtggacagtgagaaggggatctccctccgcttccctcggtttattcgtgtccgtgag
gacaagaagccggagcaggccactaccagtgcccaggtggccggtctgtacaagaagcag
agtcagattcagaaccagcagggtgcggagccggactccgagcaggaagagttctactag
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