Bubalus bubalis (water buffalo): 102404536
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Entry
102404536 CDS
T05912
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102404536 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbub03021
]
102404536 (POLR1A)
Enzymes [BR:
bbub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102404536 (POLR1A)
Transcription machinery [BR:
bbub03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
102404536 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
102404536
NCBI-ProteinID:
XP_006042102
EnsemblRapid:
ENSBBUG00015021551
LinkDB
All DBs
Position
12:48266175..48350798
Genome browser
AA seq
1719 aa
AA seq
DB search
MLGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADS
KEVCSTCVQDFTNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLL
LCQLRVLEVGALQAVYELERILYRFLEENADPTACEIQEELEQYTVKILQNNLPGSQGAQ
VKNVCESRSKLISVFWKVHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHRGADQKGT
EAQGIEEAQLGKRGYLTPSSAQEHLIALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLD
FLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLAVMAQEQELPSEVAAATT
EEEKDSWMAMDRSFLSQLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPNVHPGASMVINEDGSRTALSASDLTQREAVAKQLLTPATGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFNREQYMELVYRG
LTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLVNIIPEDHIPLNLSGKAKIGGKAWVKES
PRLVPGFNPDSMCESQVIIRAGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTC
LARLFTAYLQLYRGFTLGVEDILVKPKADVRRHGIIEDSTHCGPRAVRAALNLPEAVSCD
EVQGKWQDAHLNKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK
PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLTSNYEVIMKSKHLHEVLSRADPQKALRHFRAIKKWHSKHS
NTLLRKGAFLNYSQKIQAAVKALNLEGTNQNGRSPETYQMLRLWAELDEQSRRKYQKKAA
PCPDPSLSVWRPDIYFASVSETFEKKMDDYSCEWAAQAKRSYEKSGLSLDSLRTLLQLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVFNTKKALKKVKSLKKQLTRVCLGEVLEKIDVQESFYMGEKQNKFRVYQLRFQ
FLPHAYYQQEKCTRPEDILHFMETRFFKILMEAIRKKNSKASAFRNVNMRRATQRDLDNA
GESERNRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYDSEEEEEEEKEEE
EKEDEDIQEEGTSLKEGVQQEQEEGSWAPEESLLPGAPLTQPQKRARSREPQGAEAVERR
AQAVRECHPFIEDYQYDTQGGLWCQVTLKLPLMKVNFDMSSLVASLAQGAVIYATKGITR
CLLNETTNSKNEKELVLNTEGINLPELFKYAEILDLRRLYSNDIHAMASTYGIEAALRVI
EKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFL
KQATLMGSHDELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atgttgggctcaaagaacatgccctggcggcggctgcagggcatttccttcgggatgtat
tcggccgaagaactcaagaaattaagcgtgaagtccattacgaaccctcggtacctggac
agcctggggaacccctcggtaaatggcctgtatgatttagctctgggccccgctgactcc
aaagaggtgtgctccacctgcgtgcaggacttcaccaactgctctgggcacttgggccac
atcgacctcccgctcaccgtgtacaaccctctcctcttcgataaactctacctgttgctc
cggggctcctgtttaaactgtcacatgctgacctgcccccgggctgtggttcacctctta
ctgtgccagctgagagtcctggaagttggggccctgcaagcagtgtatgagctggagaga
attctctacaggtttctggaagaaaatgctgatcctactgcctgtgaaattcaggaagag
ctagaacaatatacagtcaaaatcctgcagaacaacctcccgggatcccagggtgcacaa
gtgaaaaatgtctgtgagagcaggagcaaactcatctctgtcttctggaaggtacatatg
actgctaagagatgtccccactgcaaaactgggcggtcagtggtccggaaggagcacaat
agcaaactgaccatcacgtatccggccatggtgcacaggggagctgaccagaagggcact
gaagcccagggaattgaggaagctcagttgggaaaacgaggatacctgacaccctccagt
gctcaagaacatctcatagctctttggaaaaatgaagggttctttctgaattaccttttt
ttgggactggaagatgttggcatggagtccaggttcaaccccagtatgttctttctggat
ttcttggtggtaccaccctcaaggtatcgccctgtcaaccgccttggggaccagatgttc
accaacgggcagacggtgaacttgcaggctgtcatgaaggacgtggttctgatccgaaag
cttctggcagtgatggcccaagaacaggagctgccaagtgaggtggcagcagccaccaca
gaagaggaaaaagactcttggatggctatggaccgatcctttttgagtcagcttccaggc
cagtccctcacagacaaactttacaacatttggattcgccttcagagccacgttaatatt
gtgtttgatagcgagatggacaaattaatgatggaaaagtaccccggcattagacagatc
ctggagaagaaggatggtttgttccgaaagcacatgatggggaagcgtgtagactacgca
gcccgctcggtcatctgcccagacatgtacatcaacaccaacgaaatcggaattcccatg
gtgtttgccacaaagctgacctaccctcaaccagtcaccccctggaacgttcaggaactg
aggcaggcggtcatcaacggccccaacgtgcaccctggagcctctatggtcatcaacgag
gatggcagtcgcacagccctgagcgcctcggacctcacgcagcgggaggccgtggccaaa
cagctcctgacaccagctacgggggcccctaagccccaggggacaaaaattgtgtgccgg
catgtgaagaacggggacattctcctcctgaaccggcagcccaccctgcacaggccctcc
atccaggcgcatcgcgcccgtgtcctccccgaggagaaagtcctgcgactccactacgcc
aactgcaaggcctacaacgccgacttcgatggagatgagatgaacgcccacttcccccag
agtgaactgggccgggccgaggcctacgtcctggcctgcaccgatcagcagtaccttgtt
cccaaggatggccagccattggcggggctgatccaagatcacatggtttcaggagcaaac
atgaccattcgaggctgctttttcaaccgggagcagtatatggagctggtgtaccgagga
ctcacagacaaagtggggcgtgtgaagctctttcctcctgccatcctaaagccctttcct
ctgtggacaggaaagcaggttgtgtccacattgctcgtcaacataatcccagaggaccat
atccccctgaacttgtcaggaaaggcgaagattggtggaaaggcctgggtgaaggagtct
cctcggctcgttcccggctttaaccctgactccatgtgcgagtcccaggtgatcatcaga
gcaggggagctgctgtgcggggtgctggacaaggcgcactatgggagctccgcctacggc
ctggtccactgctgctacgagatctacggtggggagaccagcggcagggttcttacctgc
ctggcccgcctctttaccgcctacctgcagctctacagaggcttcaccttgggagtagaa
gacattttggtcaagccgaaggcggatgtcaggagacatgggatcattgaagactccacc
cactgtgggccccgggccgtcagggctgcgttaaacctgccagaggcagtgtcatgtgat
gaagtccaagggaagtggcaggatgcccatctgaataaagatcagagggattttaacatg
attgacttgaagttcaaggaggaagtgaaccattacagcaatgaaattaacaaggcatgc
atgcccttcggcctgcacagacagttcccagagaacaatctgcagatgatggtgcagtct
ggagccaaaggttcgacagtgaacaccatgcagatttcgtgcctgctgggccagatcgaa
ttggaaggtcggagacccccgctcatggcatctggcaaatcgttgccctgcttcgagcct
tatgaattcacccccagggctggtggcttcgtcactggcagattcctcactggcatcaag
cctccggagtttttcttccactgcatggccgggcgagagggtctggtggacactgctgtg
aagaccagccgttccggatacctccagaggtgcatcatcaaacacctggagggactggtt
gtccaatacgacctgacagtccgcgacagtgacggcagcgtggtgcagttcctgtacggg
gaggacggcctggacatccccaagacacagttcctgcagcctaagcagttcccgttcctc
accagcaactatgaggtaataatgaaatcgaagcatctccatgaagttttatccagagcg
gatccccagaaagctctccgtcatttcagagccatcaaaaaatggcacagcaagcattcc
aacaccctcctgaggaaaggcgccttcttgaattactcccagaaaattcaggcggctgtg
aaagccttgaaccttgagggcacaaaccagaacggccgcagccccgagacttaccagatg
ctgaggttgtgggctgagttagacgaacaaagccggaggaagtaccagaagaaggcggct
ccttgtcccgaccccagtctgtctgtctggcgcccagacatctacttcgcatccgtgtca
gaaacatttgaaaagaagatggacgactacagctgcgagtgggcagctcaggcaaagcgg
agttacgagaaatcggggctttctctcgacagtttgaggactctgctgcagctcaagtgg
cagcgctctctatgcgacccgggtgaggccgtgggcctgctggccgcccagagcatcggg
gagccctccacacagatgacgctcaacaccttccactttgccggcagaggcgagatgaac
gtcaccctgggcattccgaggttgcgggagatcctcatggtggccagtgccaacatcaag
acaccgatgatgagtgtacctgtgttcaataccaagaaagcactgaagaaagtgaaaagc
ctgaagaagcaactcaccagagtgtgtctcggggaggtgttggagaaaattgatgtccag
gagtccttctatatgggggagaaacagaacaagttccgggtataccagctgcggtttcag
ttcctgccgcatgcgtactaccagcaggagaagtgcacgaggcccgaggacatcttacac
ttcatggaaaccagattctttaaaattctgatggaagccatcaggaagaagaacagcaaa
gcatcagctttcagaaatgtgaacatgcggagagccacccagcgggatctagacaatgct
ggcgagtcagagaggaatcggggagagcaggagggcgacgaggaagaggaggggcacatt
gtggacgctgaagctgaggagggagatgctgatgcctcggatgccaaacgcaaggaaaaa
caagaggaggaggtcgactatgacagcgaggaggaggaggaggaggagaaggaggaagag
gagaaggaggacgaggacattcaggaggaagggaccagcctcaaagaaggcgttcagcag
gagcaggaggaaggcagctgggcccccgaggagagcttgctccccggcgcccccctgacg
cagccacagaagcgcgcccgaagccgggagccccagggggccgaggcggtggagcgccgg
gcacaggcggtgcgcgagtgccacccgttcatagaggactaccagtatgacacacagggc
ggcctgtggtgccaggtgacgctgaagctccctctcatgaaagtcaactttgacatgagc
tccctggtagcatccttggcccaaggagccgtcatctacgcaaccaagggtatcacaagg
tgcctcctgaatgagaccaccaacagtaagaacgagaaggagcttgtcttaaacacagaa
ggcatcaacctcccggagctgttcaagtacgccgagatcctagatctgcgccgtctctat
tccaacgacatccatgccatggccagcacgtacggcatcgaggccgcactgcgcgtgatt
gaaaaggagatcaaggacgtgtttgctgtatacggcatcgccgttgacccccgccacctc
tcgctggtggctgactacatgtgcttcgagggtgtttacaagccactgaaccgctttggg
atccggtcaaactcctcgccgctgcagcagatgacgtttgagaccagcttccagtttctg
aagcaggccaccctcatgggatcccatgacgaactgaggtccccatcagcctgcctcgtg
gtcgggaaggtcgtcaagggtgggaccggcctcttcgagctcaagcagccactaagatag
DBGET
integrated database retrieval system
