Burkholderia cenocepacia H111: I35_4474
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Entry
I35_4474 CDS
T03804
Symbol
rpfR
Name
(GenBank) Cis-2-dodecenoic acid receptor RpfR
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
bceo
Burkholderia cenocepacia H111
Pathway
bceo02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
bceo00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
I35_4474 (rpfR)
Enzymes [BR:
bceo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
I35_4474 (rpfR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS
PAS_9
PAS_4
Motif
Other DBs
NCBI-ProteinID:
CDN62310
LinkDB
All DBs
Position
2:544979..546982
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AA seq
667 aa
AA seq
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MDDENDSAVLEAHVGTRSPCWRLGSDSNALELAAVRGLTNVAIALTVEQAARIRALTGVT
SHLVLDIVLFGNPVSLHLVGRKVNTVDWAGTASAYSDTESVAGDLSHGLAFAEQVVSEVN
SLVVILDRNGMVQRFNRLCEEVTGKREVDVIGRSAFELFMSPEQGAQSRSNITGFFASNQ
SFAVERYINTVNGPRLFQFRNKFVQSGSGVDEQYLICSGIDITEERNAQQRLTELANTDV
LTGLPNRHAISERIHAAIAAESEQTRGQVGILFLDLDNFKRVNDHYGHITGDRLLQDVSA
IISGCLPSGATLARLGGDEFLVLFEQGTRPLLEATAQIILERLRTPIHLGLMEVYTSCSI
GIAMHPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLRKALE
EEQFVLHYQPVVDIATGDVHGVEALIRWQSPDRGLVAPVEFIRFAEESGLIAPLGRWVMR
TAAAQAAAWKAKGLGIRIAVNVSARQLQDMNIVHQFASILDGAGLKPGLLDIELTESCFI
EDEDAAIGLMRQFRQLGAEIHLDDFGTGYSSLSQLSRLPLDAIKLDRTFITAIDRNPRSQ
ALVRSVVSLAKALNFAVVAEGVETHAEAEFLKQLDVDHAQGYYYARPMPAQAFEAWLAET
RKLRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgaaaacgatagcgcggtgctcgaggcgcacgtcggtacgcgcagcccctgc
tggcgtctcggcagcgacagcaacgcgctcgaactggccgcggtccgcggcctgaccaac
gtcgcgatcgcgctgacggtcgagcaggcagcgcgcatccgcgcgctgaccggcgtcacg
tcgcacctcgtgctcgacatcgtgctgttcggcaacccggtcagcctccatctcgtcggc
aggaaggtcaatacggtcgactgggccggcacggcgtccgcctattccgataccgaatcc
gtcgccggcgacctgtcgcacgggctcgcgttcgccgagcaggtcgtgtccgaagtgaat
tcgctcgtcgtgatcctcgaccgcaacgggatggtgcagcgcttcaaccgcctgtgtgag
gaagtgacgggcaagcgcgaggtcgacgtgatcggccgcagcgcgttcgagctgttcatg
agccccgagcagggcgcgcagtcgcgcagcaacatcacgggcttcttcgcgagcaaccag
tcgttcgcggtcgagcgctacatcaacacggtcaacgggccgcgcctgttccagttccgc
aacaagttcgtgcagagcggcagcggcgtcgacgagcagtacctgatctgctcgggcatc
gacatcaccgaggagcgcaacgcgcagcagcggctcaccgagctcgcgaacaccgacgtg
ctcaccgggctgccgaaccgccatgcgatcagcgagcgcatccacgcggcgatcgccgcg
gagagcgagcagacgcgcgggcaggtcggcatcctgttcctcgatctcgacaacttcaag
cgcgtcaacgatcactacgggcacatcaccggcgaccgcctgctgcaggacgtgtcggcg
atcatcagcggctgcctgccgtccggcgcgacgctcgcgcggctcggcggcgacgaattc
ctcgtgctgttcgaacagggcacgcgcccgctgctcgaagcgaccgcgcagatcatcctc
gagcggctgcgcacgccgatccatctcgggctgatggaggtctacacgagctgctcgatc
ggcatcgcgatgcatccgcagcacggcgattcgctcgagacgctgatccgcagcgccgat
accgcgatgtacgtcgcgaaggaagagggcaagcatacgtatcgcgtgttctcgctggag
atgaaccagaaggtcgcgaagtacatgtggctcgacacgaacctgcgcaaggcgctcgag
gaagagcagttcgtgctgcattaccagccggtcgtcgatatcgcgacgggcgacgtgcac
ggcgtcgaggcgctgatccgctggcagtcgcccgatcgcgggctcgtcgcgccggtcgag
ttcatccgtttcgcggaagagtcggggctgatcgcgccgctcggacgctgggtgatgcgc
acggcagccgcgcaggctgccgcgtggaaggcgaaggggctcggcatccggatcgcggtg
aacgtgtccgcgcggcagttgcaggacatgaacatcgtgcatcagttcgcgtcgattctc
gacggcgcggggctcaagcccggcctgctcgacatcgagctgaccgagagctgcttcatc
gaggacgaggacgcggccatcgggctgatgcggcagttccgccagctcggcgcggagatc
catctcgacgatttcggcaccggctattcgtcgctgtcgcagttgtcgcggctgccgctc
gacgcgatcaagctcgaccgcaccttcatcacggcgatcgaccgcaatccgcgctcgcag
gcgctggtgcgctcggtcgtgtcgctcgcgaaggcgctgaatttcgcggtggtcgccgaa
ggcgtcgaaacgcatgcggaagccgaattcctcaagcagctcgacgtcgatcacgcgcag
ggctactactacgcgcggccgatgccggcgcaggcgttcgaggcgtggctcgcggagacg
agaaagctcaggctgatcgcctga
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integrated database retrieval system
