Heyndrickxia coagulans 2-6: BCO26_1171
Help
Entry
BCO26_1171 CDS
T01527
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
bck
Heyndrickxia coagulans 2-6
Pathway
bck03030
DNA replication
bck03430
Mismatch repair
bck03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BCO26_1171
03430 Mismatch repair
BCO26_1171
03440 Homologous recombination
BCO26_1171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bck03032
]
BCO26_1171
03400 DNA repair and recombination proteins [BR:
bck03400
]
BCO26_1171
Enzymes [BR:
bck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BCO26_1171
DNA replication proteins [BR:
bck03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BCO26_1171
DNA repair and recombination proteins [BR:
bck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BCO26_1171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
RNase_H_2
HHH_3
Zn-ribbon_8
DUF2608
YhfH
Motif
Other DBs
NCBI-ProteinID:
AEH53230
LinkDB
All DBs
Position
1220830..1225158
Genome browser
AA seq
1442 aa
AA seq
DB search
MIENPAGKKERFQILLRQLELLDDRFYEHFKYGEIEKLVVERQSKRWHFYFLLEKILPFE
VYLTFTTRLRQAFQHIADVRFSIRAKDPSFGPALIADYWKTCLGELEGMSPMLLSLLADQ
VPSLSGNKLVVTGRNEPEAAALKQKYGEWIVRFYERAGFPQLMFDTEISAAPEASEAYAK
FMEEKKKEDEERAKQAVLEMQKHVNEQQSGEETHDAGPLMIGLRIPPDDDIRRLSEIVDE
ERRITVEGYVFDVETKELRSGRTLLTLKITDYTSSILVKMFSRDKEDAAQFARVKKGMWL
RARGSIQNDTFVRDMVMIANDLSEVAPRVRKDHAPENEKRVELHLHTPMSQMDAVTSASA
LVAQAKKWGHPAIAITDHAVAQSFPEAYSAGKKNGIKVIFGVEANLVDDGVPIAYNDAHV
HLDEATYVVFDVETTGLSAVYDTIIEIAAVKIQDGEVVDTFERFANPGRPLSNTIIELTH
ITDDMLKDAPDISEVLKEYIEWIGDAVLVAHNASFDTGFLNVGLKKAGLPKSNNPVIDTL
ELGRFLYPDFKNYRLNTLAKKFNVELTQHHRAIYDTEATGHIFLKMLNDARNRGITYHDE
LNQYMGEGGAYKRARPSHCTLLVRTQEGLKNLFKLISLSHIDYFYRVPRIPRSELQKYRE
GILVGSGCDKGEVFEGMMQKDPAEVEEMARFYDYLEVHPKEVYAPLIDQELIRDEKALEE
IITKIVRLGEKLNLPVVATGNVHYLNPEDKIYRKILISSQGGANPLNRHRLPDVHFRTTD
EMLACFSFLGDEKAKEIVVENTNKIAGLIEDVKPVKDELYTPKIEGAEEEIREQSYKRAK
MIYGDPLPEIVEARLEKELKSIIGHGFAVIYLIAHKLVKKSLNDGYLVGSRGSVGSSLVA
TMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPECGAKYKKDGHDIPFET
FLGFKGDKVPDIDLNFSGDYQPRAHAYTKVLFGEEYVYRAGTIGTVAEKTAYGYVKGYAQ
DHNLTFRSAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDHNSEWRT
THFDFHSIHDNILKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPEPLGVT
EEQIMCKTGTLGIPEFGTKFVRQMLEDTKPTTFAELVQISGLSHGTDVWLGNAQELIQNG
TCTLPEVIGCRDDIMVYLIYQGLEPSLAFKIMESVRKGKGLTPEMEEEMIKQNVPKWYIE
SCKKIKYMFPKAHATAYVLMAVRIAYFKVYHPLIYYATYFTVRAEDFDLDVMIHGSNSIK
AKISEINAKGMDASAKEKSLLTVLELALEMTARGFRFQPIDLYRSEADKFVIDGDSLIPP
FNAIPGLGTNAAVNIVKAREEGEFLSKEDLQRRGKVSKTIMEYLDGHGCLESLPEQNQLS
LF
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaaatcccgccggaaagaaagaaaggttccagattttgctccggcagctggaa
ctgcttgatgacaggttttacgagcattttaaatacggagaaattgaaaaactagttgtg
gaacgccagtcaaagcgatggcatttttattttttactcgaaaaaattctcccctttgaa
gtgtacttgacatttacaacccgtttgcgccaggcttttcagcatattgccgacgtccgt
ttttcaatccgggcgaaagacccttcttttgggccggcactgattgccgattactggaaa
acttgccttggagaactggaaggcatgtcgccgatgcttttgtccctgcttgcggatcag
gttccgtcactttccggcaataagctggtggtaaccggccgcaatgaaccggaagcagca
gcactaaaacaaaaatacggggaatggatcgtccgtttttacgaacgggccggttttccg
cagttaatgtttgacacggaaatttcggctgcgcctgaagcaagtgaagcatacgctaaa
tttatggaagaaaagaaaaaagaagatgaggaacgggcaaaacaggccgttctcgaaatg
cagaagcacgtgaatgagcaacagagcggggaagaaacgcacgatgcaggaccgcttatg
atcgggctgagaatcccgcccgatgatgatatccgccgcctttccgagattgttgatgaa
gaacggcggattacggtggaaggctatgtgtttgacgtcgaaacgaaagaactgcgcagc
gggcggacgcttttgacgttaaaaatcaccgattatacgagctccattctcgtaaagatg
ttttcgcgggataaggaagatgccgcacaatttgcccgcgtgaaaaaagggatgtggctc
cgtgcgcgcggcagcatccagaatgatacgtttgtccgtgatatggtcatgatcgctaac
gatctttctgaagtggccccgcgcgtccggaaagaccatgcgccggaaaatgagaagcgg
gtcgaactccatctccatacgccgatgagccagatggatgcggtcacttctgcgtctgcc
cttgtcgcccaggcgaaaaaatggggccatccggcgattgcgattacagaccacgccgtt
gcacaaagttttccggaagcttacagcgccggcaaaaagaatggcataaaagttatcttc
ggcgttgaagccaatcttgtcgacgacggggtgccgattgcctataatgatgcgcacgtc
caccttgatgaagcgacatatgtcgtctttgacgttgaaacaacgggattatctgccgtt
tatgatacgatcatcgaaatcgctgcggtgaaaatccaagacggcgaagtggtcgatacg
tttgaacggtttgccaatcccggacgtccgctgtccaatacgattattgagctgacccat
attaccgacgatatgttgaaagatgcgccggacatttccgaagtgttgaaagaatacatt
gaatggattggcgacgcggtgcttgttgcccacaatgcttcgttcgacaccgggttttta
aatgtcggcctgaaaaaagccgggctgccgaaatccaataatcccgtcattgatacgctt
gaactcgggcggtttttatatccggatttcaaaaactaccggctgaacacgctcgcgaaa
aagttcaatgtggaactgacccagcaccaccgcgcgatctatgacacggaagcaacagga
catatctttttaaaaatgctgaatgacgcccgcaaccgggggatcacataccatgacgaa
ctgaaccagtatatgggcgaaggcggcgcgtacaagcgggcacgcccgtcgcactgtacg
ttgcttgtccggacgcaggaaggcctgaaaaatttatttaaactgatttccctgtcccat
atcgattacttttaccgtgtgccgcgcattccgcgttccgagctgcaaaagtaccgggaa
ggcattctcgtcgggtccggctgtgacaaaggcgaagtatttgaaggcatgatgcagaaa
gatccggcggaagtagaggagatggcccgcttttatgattaccttgaagttcatccgaaa
gaagtgtacgccccgctgatcgaccaggaattgataagggacgaaaaggcgcttgaagaa
atcattacgaaaatcgtccggctcggggaaaaattgaatctgccggttgtcgcaacaggc
aatgtccattatttaaaccccgaagacaaaatttaccggaaaatcctgatcagctcccag
ggcggcgccaatccgctgaatcggcaccggctgcctgacgtgcatttccgcacaacggat
gaaatgcttgcatgcttctcgtttttaggcgacgaaaaggcaaaagaaattgtggttgaa
aacacaaataaaattgccggcttaatcgaggacgtcaagccggtaaaagacgagctgtac
acgccgaaaattgaaggggcggaagaagaaatccgcgagcaaagctataagcgcgcgaag
atgatttacggggacccgcttcccgaaattgtcgaagcacggcttgaaaaagagctgaaa
agcattatcggccacggatttgcggtcatttatctgattgcccataaacttgtcaagaaa
tcattgaatgacggttaccttgtcggttcgcgggggtctgtcggttcttcgcttgtcgca
acgatgacggaaatcaccgaagtcaacccgctcccgccgcattatgtgtgcccgaactgc
aagcattccgagtttttcaatgacggttcggtcggttccggttttgacctgccggataaa
aactgcccggaatgcggggcaaaatacaaaaaggacggccatgatattccgtttgaaacg
ttccttggatttaaaggggacaaggtgccggatattgacctgaacttctccggcgattac
cagccgcgcgcccacgcctatacaaaagtgctgttcggcgaagagtatgtataccgcgcc
ggcacgattggcacagttgcggaaaaaacggcttacggctatgtaaaagggtatgcccag
gaccacaatttgacattccggagcgcggaaattgaccggcttgtccagggctgcaccggg
gtaaaacggacgaccggccagcatccgggcggcattattgtcgtgccggattatatggat
atatacgattttacgccgatccagtatccggcggacgatcacaattcggaatggcggaca
acgcattttgatttccactcgatccacgataatattttgaagcttgatatacttgggcac
gatgatccgaccgtcatccgcatgctccaggacttaagcgggattgacccgaaaacgatc
ccgaccgatgacccggaagtgatgaaaattttcagcgggccggaaccgctcggggttacg
gaagagcaaattatgtgcaaaaccggtacgcttggcatcccggaatttggcacaaagttt
gtgcgccagatgctggaagatacaaaaccgacgacttttgcggaactggttcagatttca
ggtctttcgcacgggacggacgtatggctcggcaacgcccaggaactgatccaaaacggc
acctgcaccctgcctgaagtgatcggctgccgcgacgatattatggtttatttaatctat
cagggcttagagccgtcccttgcttttaaaattatggaatcggtacggaaggggaaaggg
ctcacgcctgaaatggaagaggaaatgatcaagcaaaacgtgccgaaatggtatattgaa
tcgtgcaaaaagattaaatacatgttcccgaaagcccacgccaccgcctatgtgctgatg
gcggtaaggatcgcttacttcaaggtgtaccatccgctgatctactatgcgacgtatttt
acggtgcgcgcggaggatttcgatctggatgtaatgatccacggctcgaattccatcaag
gcaaaaatcagtgaaattaatgcaaaagggatggacgcatcggcgaaagagaaaagtttg
ctgaccgtgctggaactggcgcttgaaatgacggcgcgcggcttccgcttccagccgatt
gatttgtaccggtcggaagcagacaagtttgtcattgacggcgattcgctcatcccgccg
tttaatgcgattccggggcttggcacaaacgctgcggtcaatatcgtcaaagcgcgcgaa
gaaggcgaattcctttcaaaagaagacttgcagcgccgcggaaaagtctccaaaacgatt
atggaataccttgacgggcacggctgcctcgagtcgctgccggagcagaaccagctgtcg
cttttctaa
DBGET
integrated database retrieval system
