Bradysia coprophila: 119071688
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Entry
119071688 CDS
T08269
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03020
RNA polymerase
bcoo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119071688
09124 Replication and repair
03420 Nucleotide excision repair
119071688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcoo03021
]
119071688
03400 DNA repair and recombination proteins [BR:
bcoo03400
]
119071688
Enzymes [BR:
bcoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119071688
Transcription machinery [BR:
bcoo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
119071688
DNA repair and recombination proteins [BR:
bcoo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
119071688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
119071688
NCBI-ProteinID:
XP_037032570
LinkDB
All DBs
Position
IV
Genome browser
AA seq
1855 aa
AA seq
DB search
MATSDSKAPIRTVKRVQFGILAPDEIRRMSVTEGGIQFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLCKPVYHIGFLTKTMKILRCVCFYCSKMLVSPTNPK
IKEIIIKTKGQPRKRLTYVYDLCKGKKVCEGGEDMDLTKDAQLDPNKKAGHGGCGHYQPS
IKRSGLELMAEWKTVNENSQEKKLPVTAERCWEIFKHITDEECFILGMDPKFARPDWMIV
TVMPVPPLSVRPAVVMFGAAKNQDDLTHKLADIIKANNELKKNESIGAAAHVISENIKML
QFHVATFVDNDIPGMPRATQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVKRGHSQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQWGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFIDKEQVMNILMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNVIRTHSTHP
DEEDDGPYKWISPGDTKVMVEHSELIMGILCKKTLGASAGSLLHICFLELGHEIAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYHEIQQSIRKAKEDVISVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVNYDGTIRNSVGQLIQLRYGEDGLCGELVEFQSLPTIK
LSHKTFEKRFRFDVSNERYLRRIFNEDVVKDLSESSKVIQSLESEWEQLCRDREALRQIF
PSGESKVVLPCNLQRMIWNVQKIFHINKRVPTDLNPLKVIQGVQDLLQKCVIVVGNDHLS
KQANENATLLFQCLVRSTLCTKYVAEEFRLTVEAFEWLVGEIESRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPW
LLRIELDRKRMTEKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNGEDNKFQ
DNEEDTVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFK
AIGEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEND
PMRGVSENIIMGQLPKMGTGCFDLLLDAEKCKYGIEIQSTMGPDLMSGTGMFFGAGSTPS
TLSPSRTPWLMSGTPQHVAWSPNNPASGMTPGGPSFSPSAQSDASGYSPAWSPGHPSSPG
SPGPPMSPYSPNMSPNYSPNNYGGDLASNYSPTSPTYSPTSPSYPSPVQSYSPTSPQNYS
PASPVYSPASPSYSKSSPSRSPQYPGNIGGASYSPRYTPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPSSPNYTPATPSYISPSSPKYFSSPTYSPTSPSYSPSSPKYSPTSPS
YSPTSPSTFTSSPHYTASPNYSPTSPNYSLSSPAYSPSSPNSGSNIYSPSAISQVPSSYS
PQSPTTYSPEGSSYSPRASPAYSPTIKSLSPENQTYSPTSPTYSPSSPPYSEQEQ
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atggcgacatcggactcaaaagcaccgattcgaacggtgaaacgagtacaattcggcatc
ctggcacccgacgaaattcgtcgaatgtccgtgaccgaaggaggtattcagtttcccgag
acgatggaaggtggacgccctaaactaggtggcttaatggatccccgacagggtgtaatt
gaccgaaattcacgttgtcagacgtgtgccggaaatatgacagagtgccctggacatttt
ggtcacattgatctgtgtaaaccggtctatcacatcggtttcctcaccaaaactatgaaa
attttgcgttgcgtttgtttttactgttccaaaatgctggtcagtccaaccaatccgaag
atcaaagaaatcattatcaagacgaagggacagccgagaaaacgtttgacgtatgtgtac
gacttgtgcaaaggtaaaaaagtgtgcgaaggcggtgaggacatggatctgacaaaagat
gcacagttggatccaaacaagaaagctggacatggtggttgcggtcactatcagccgtcg
attaagcgaagcggtttggaattgatggcagaatggaagacagtgaatgaaaattcgcaa
gagaaaaaattgccagtcacagctgaacgatgctgggaaatctttaagcacataactgac
gaagagtgtttcattttgggtatggatccgaaatttgcacgacctgactggatgattgtc
acagtgatgccagtacctccattgtctgtaagaccagctgtcgttatgtttggcgcggca
aagaatcaagacgatttaactcacaaattagctgacatcatcaaagcaaacaacgaattg
aagaaaaacgaatcgattggtgcagctgctcatgtaatttcagagaacataaaaatgttg
cagttccacgtagctacgtttgtcgacaacgacattcccggtatgcccagagctacgcaa
aagtctggtaaaccgttgaaagcggtcaaagcacgtctcaagggaaaagaaggccgaatt
cgtggtaatttgatgggaaagcgtgtcgatttttccgcccgtactgtcatcaccccggat
ccaaatttacgtatcgaccaagtcggcgtgcccagatcgattgcacagaatctaacgttt
ccggaattggtaacgccattcaacatcgacagaatgcaagagttggtgaaacgtggccat
tcacaatatccgggcgctaagtacattgttcgtgacaatggcgaacgtatcgatctgcgt
ttccatccgaaaccgagtgacctgcatcttcaatggggctacaaagtcgaacgacactta
cgtgacgacgatttggttatattcaatcgtcagccgacattgcacaagatgagtatgatg
gggcacagagtgaaagtgttgccgtggtcaacatttcgaatgaacttgagttgtacatcg
ccgtacaatgccgatttcgatggcgatgagatgaacttacacgtaccgcaatcaatggaa
actcgagccgaagttgaaaacatccacataacgcctcgccaaatcattacacctcaagcg
aataaacccgtcatgggtatcgtacaggatactttgactgctgtacgaaagatgaccaaa
cgtgacgtattcattgataaagagcaagtgatgaacattctaatgtttttgccgacctgg
gatggtaaaatgccacagccttgtattttgaaaccgaaaccgttgtggactggaaagcaa
attttcacattaatcataccaggcaatgtgaatgtcattcgaacacattccacgcatcct
gacgaagaagatgatggaccttacaaatggatttcaccgggtgatacaaaagttatggtt
gaacatagtgaactcataatgggcattttatgcaaaaagacacttggtgcttcagctggt
tcgttgctgcacatttgttttctggaacttggccatgaaattgccggtcgtttttatggt
aacattcaaactgtgatcaacaattggcttctgttggaaggccacagcatcggtatcggt
gatacaattgccgatccgcaaacataccatgaaattcagcagtctattcgtaaggccaaa
gaggatgtcatatcagtaatccaaaaggcgcacaacatggaattggaaccgacgcccggt
aatacattgcgacagacgttcgagaatcaggtgaatcgaatcctaaacgatgctcgtgac
aaaactggtggttctgcaaagaagtccttgactgagtacaacaatttaaaggctatggtc
gtgtccggtgccaaaggttccaacattaacatctctcaggttatcgcttgtgtgggtcaa
cagaacgttgagggcaaacgtataccgttcggcttccgcaaacgaacattgccacatttc
atcaaagacgattacggtcccgaatccagaggtttcgtcgaaaattcatacctggccggt
ctgacaccatctgaattttatttccacgctatgggaggaagagaaggtctcatcgataca
gctgtaaagactgctgaaactggctacattcagcgtcgtctaatcaaagctatggagtcg
gttatggtgaactacgacggtaccattcgtaactcggtcggtcaactcattcagttgcgt
tacggcgaagacggattatgtggagagttggtcgaattccagagtcttcccaccattaaa
ttgtcgcacaaaacgttcgagaaacgattcagatttgatgtgtccaatgaacggtatcta
cgacgcatattcaacgaggatgttgtaaaggatctcagcgaatccagtaaagtgattcag
tcattggaaagtgaatgggaacaattatgcagagatcgagaagcgctaagacaaattttc
ccgagcggtgaatcgaaagtcgtcttgccatgtaatctacagcgtatgatttggaatgtg
caaaagattttccatatcaacaaacgtgttccgaccgatttgaatccgttgaaagtcatt
caaggcgtacaagacctgctgcaaaaatgtgtgatcgtggtcggcaatgatcatctgtcg
aagcaagcaaacgaaaacgctacgctgctcttccagtgtttggtgcgatcaacgttgtgc
acaaaatatgtcgctgaagaatttcgtttgaccgtggaggcttttgagtggttagtcggt
gaaatcgaatcacgtttccaacaagcccaggtcaatcctggcgaaatggttggcgctctg
gctgcacaatcgcttggtgaaccggccacacagatgacgctgaatactttccatttcgct
ggggtatcatcgaagaacgtaacacttggtgtgccacgtctaaaggaaatcatcaacatc
tccaagaagcccaaggctccatccctaactgtatttttgactggaggtgctgctcgtgat
gcagaaaaggcgaaaaatgtactctgtcgccttgaacatacaacactacgaaaggttaca
gctaatacggctatctactacgatccggatccgcaacgaacggtcatcgcagaagatcaa
gaattcgtcaacgtctactacgaaatgcctgatttcgatccaacccgaatttcgccgtgg
ttgttgcgtattgaattagatcgtaagcgaatgacggaaaagaaattgaccatggaacag
atcgccgaaaaaatcaatgccggttttggtgacgatctgaattgcatctttaacgatgat
aacgctgacaaattggttctccgcattcggataatgaatggagaagacaacaaattccaa
gacaacgaggaagatacggtggataaaatggaggacgacatgttcttgcgatgcatcgaa
gccaatatgttgtcggacatgaccctgcaaggtattgaggcaattggaaaggtgtacatg
cacttgccacagactgacagcaagaagcgaattgttatcaccgaaactggtgaatttaag
gccattggcgaatggttgctcgaaactgatggaacatcgatgatgaaagttctaagtgaa
agagacgtagatccggttcgaacgttcagtaacgatatctgcgaaattttccaggtattg
ggaatcgaagcagtacgaaaatcagtcgagaaggaaatgaacgctgtgttgcaattctac
ggattgtacgtaaactatcgtcacttggccttgctgtgtgatgtcatgactgctaaaggt
catttgatggccatcacacgtcacggtattaacagacaggataccggtgcgttgatgaga
tgttcgttcgaagaaaccgtcgatgttcttatggacgctgcatcccatgctgaaaacgat
cctatgcgtggtgtgtcggaaaatatcattatgggacagttacccaaaatgggtacaggc
tgttttgatctcttacttgacgccgaaaaatgcaagtacggcattgaaatacaaagcact
atgggaccggacttaatgagtggaacgggaatgttctttggcgctggttcgacaccatcg
acactgagtccttcgagaacaccatggttaatgtctggaacgccacagcacgttgcatgg
tcacccaacaatccagcaagtggaatgactcctggaggtccaagcttttcaccttctgca
cagtcggatgcgtctggatattcaccagcatggtcgcctggtcatccaagttctcccggt
tcacccggaccaccaatgtctccgtactcgccgaatatgtcaccaaattattctccgaat
aactatggtggagacctggcctccaattattcgccaaccagtccaacatattcaccaact
agtccatcgtatccgagtccagtgcagtcttactcgccgacaagtccacaaaattattca
ccagcaagtcctgtttattcaccggcgtcaccgagttattcgaagtcaagtccatcgcga
agtccacaatatccgggcaacattggcggagcatcatattctccacgctatacaccaaca
tcgcccagctattcacccacttcaccatcgtattcgccgactagtccatcgtattcacca
acaagtccatcatactcgccgacgtccccttcatactctccatcatcgccgaattacaca
cctgcaacaccatcttacatcagtccgagtagcccgaaatacttcagttcaccgacctat
tcaccaacatcgccaagctactcaccatcgtcgccgaaatattcaccgacctcaccgtcg
tattcgccgaccagtccatcgacatttaccagcagtccgcactatacagcttcaccgaat
tattcgccaacaagcccgaactattcactcagttcaccggcgtattcaccaagctctcca
aactctggcagcaacatttacagtccgtcagctatatcacaagtgccgtcgagctactcg
ccacagagtccaacaacatattcgccagaaggcagttcatattcaccgagagcgtcacca
gcatattcgccaacaattaagagcctttcaccagaaaatcaaacttatagtccaaccagt
ccgacatattcaccaagcagtccaccatacagcgaacaagagcagtaa
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integrated database retrieval system
