Bradyrhizobium daqingense: LPJ38_24965
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Entry
LPJ38_24965 CDS
T07756
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
bdg
Bradyrhizobium daqingense
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bdg03009
]
LPJ38_24965 (rimO)
Enzymes [BR:
bdg01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
LPJ38_24965 (rimO)
Ribosome biogenesis [BR:
bdg03009
]
Prokaryotic type
ribosomal protein modification factors
LPJ38_24965 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
NTPase_1
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
UFS86899
LinkDB
All DBs
Position
5275346..5276665
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AA seq
439 aa
AA seq
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MDRAPRISFTSLGCPKALVDSERIITRLRAEGYELARKHDGADIVIVNTCGFLDSAKQES
LSAIGEAMAENGKVIVTGCMGAEPEAIEQAYPGVLSITGPQQYESVLDAVHRALPPAHNP
HLDLVPPQGIKLTPRHYAYLKISEGCNNRCTFCIIPKLRGDLVSRPADDVLREAERLVGA
GVKELLVISQDTSAYGVDLKYAESPWKDRQVRAKFLDLARELGELGAWVRLQYVYPYPHV
DEIIALMNEGKVLPYLDIPFQHASPDVLKAMKRPAAQDKTLARIKRWREECPDLALRSTF
IVGFPGETDADFAYLLDWLDEAEIDRLGCFKYEPVAGATSNTIENPVPEEVKQERYNALM
ARQQKISARRLKRKVGTRQRIIIDEVGPTVAKGRSKADAPEIDGAVYLSSRRPLRVGEIV
TAKIERADAYDLHGSVAGF
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggacagagcgccgcgcatttcattcacgtcactcggctgccccaaggccttggtggat
tccgagcgcatcatcacgcgcctgcgcgcggagggttacgaactcgcccgcaagcatgac
ggggccgacatcgtcatcgtcaacacttgcggcttcctcgacagcgccaagcaggaatcg
ctctcggcgatcggcgaagccatggccgagaacggcaaggtgatcgtaacgggctgcatg
ggcgcagaaccggaagcgatcgagcaggcctatccgggcgtgctctccatcacaggcccg
cagcaatatgagagcgtgctcgatgccgtgcaccgcgcgctgccgccggcgcacaatccg
catctcgacctggtaccgccgcagggcatcaagctgacgccgcgccattatgcctatttg
aagatctccgagggctgcaacaaccgctgcaccttctgcatcattccgaagctgcgcggc
gacctcgtctcgcgccccgccgatgacgtgctgcgcgaggccgagcgcttggtcggcgcc
ggcgtcaaggagctgctggtgatctcgcaggacacctcggcctatggcgtcgatctcaaa
tatgccgagagcccgtggaaggaccgtcaggtccgcgccaaattcctcgatctcgcgcgc
gagctcggcgagctcggggcctgggtccggctgcaatatgtttacccctacccgcatgtc
gacgagatcatcgcgctgatgaatgagggcaaggtgctgccctatctcgacatcccgttc
cagcatgcgagtcccgacgtcttgaaggcgatgaagcggccggcggcgcaggacaagacg
ctggcgcggatcaagcgctggcgcgaggaatgccctgatctcgcgctacgctcgaccttc
atcgtcggcttccccggcgagaccgatgccgacttcgcctatctgctcgactggctcgac
gaggccgagatcgatcgtctcggctgcttcaaatacgagccggtcgccggcgccacctcg
aacacgatcgagaaccccgtgccggaagaggtcaagcaggagcgctacaacgcgctgatg
gcccgccagcagaagatctcggcgcgccggctgaagcgcaaggtcggcacgcggcagcgg
atcatcatcgacgaggtcggtccgacggtggcgaagggccggtcgaaggccgatgcgccg
gagatcgacggcgcggtgtatctctccagccgccgtcccttgcgcgtcggtgagatcgtc
accgccaagatcgagcgcgccgacgcatacgacctgcacggcagcgtcgcggggttttga
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