KEGG   Brachypodium distachyon (stiff brome): 100821466
Entry
100821466         CDS       T01717                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100821466
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdi03021]
    100821466
Enzymes [BR:bdi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100821466
Transcription machinery [BR:bdi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     100821466
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 100821466
NCBI-ProteinID: XP_010240509
UniProt: I1J2F6
LinkDB
Position
5:25599455..25609950
AA seq 1236 aa
MEDIPRGSGHSTNGTEPELEPMILDDDGESRSRTIDDSNEQSSMGIDSDRSSMDVDMKGK
SSLDGDGKGKYSSESHEEFPIDMSLTSLEKFCKEASRSFFDEIGLISHQINSYNDFISHG
LQELFDSLGEVTVEPSYDPSKKGPGGWRHAIIKFGKVKLQEPVFWSDKCEDKYEEALKLK
PRHARLQNMTYSSKMEVEMNIQVYSMEKSDKAKTENDHFGHKRDIINETHWVSVGRLPVM
VNSNLCWLHKLGESDCLFDSGGYFLIKGMEKIFIAQEQRCLTRIWVDDRPCWTVSYMSEI
KRKRTYVKLIDSTKSNDFSESKIISISFLYANMPVWLMFFALGISSDKEVFDIIDFKDSD
ASVINMISATISESNELCEGFRKSDKARQYVDDLVKSSKFPPAESFDDYVARFLFPGISG
NRNKAFFLGYMVKYLLMAFTGKLKCDNRDAFRNKRLELPGELLGRELRAHLRHAERLMVK
AMQRDLNSDRDLQFPLGYLDPTIITNGINRAFATGSWCHPYKRNERCSGVVATLRRTNPL
QMMSDLRKSRQQVAYAGKAGDARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRV
VQPLIDRFVSCGMNKLDEIPAGQIPKMDKIFLNGNWVGSCTDPASFVMRLRCMRRGNLID
PQVEIKRDKHQIPGEVRVFSDAGRILRPLLVVENLNKIRKPKDGSYSFQALMQQEIIEYI
GVEEEEDILCAWGIRHLFPGSGEDFSGYTHCELDLSFLLGLSCSLIPFANHNFARRVLYQ
SEKHSQQAIGYSTTNQLTRVDTLSHQLYYPQRPLFKTVTADCIGRSDYTIGRTDDFARPE
YFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTELIRSYKADVETKEPAKRLKLKE
KVDFGKMQSKRGRVDSLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQR
VLLSANDEEKNFAVVTLRQVRSPCVGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDIV
INPHAFPTRQTPGQLLEAALGKGIALGSAMRYATPFTTASLEVISEQLHKAGFSGGGTES
VLNGQTGERMHSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG
EMERDCLLAHGAAANLHERLFMLSDFAQMHICQTCQRAANVVMRAIPGGKKIRGPYCGFC
RSSENKVRIAVPYGAKLLYQELFSMGICLKFKTEVC
NT seq 3711 nt   +upstreamnt  +downstreamnt
atggaagatataccaaggggcagtggacactcaacaaatggcactgagcctgagctggaa
cctatgatactggatgacgatggggagagcagatcccgtaccattgatgattcaaatgag
cagtcttctatgggtattgacagcgatcggtcttccatggatgtggatatgaaggggaaa
tcatccctggatggtgacggcaaaggaaagtattcttccgagtcacatgaagaatttcca
attgacatgagcttgacaagtctagagaagttttgcaaggaagcatctaggtcatttttt
gatgaaattggtctcattagccaccagataaattcctataacgatttcatctcgcatggg
ctccaggagctttttgattcgctaggcgaagtgactgttgagcctagctatgacccttca
aagaaaggaccaggtggttggaggcatgccatcatcaagtttgggaaagtgaaactacaa
gagcctgtattctggtctgacaaatgtgaggacaaatatgaggaggcactcaagctcaaa
ccaagacacgctcgcctccagaatatgacatattcctccaaaatggaagtagaaatgaat
attcaggtttattctatggagaaaagtgataaggctaaaacagagaatgatcattttggg
cacaagagggatatcattaatgaaacccattgggtgtctgttggccgccttccagttatg
gtcaattcaaatttatgctggctgcataaacttggggaaagtgactgcctttttgattct
ggtggatactttctgatcaagggaatggagaagatatttatcgcgcaagagcaaagatgc
ttgaccaggatttgggttgatgatcggccttgctggactgtctcttatatgtctgaaatc
aaacgaaaacgcacatatgtaaaactaattgattctacaaagagcaatgatttcagtgag
agcaaaatcatctccatttcctttttgtatgccaacatgccagtttggttaatgtttttt
gcgctaggcatatcatctgataaggaggtatttgatataattgatttcaaagactctgat
gcttctgttatcaacatgatatctgcaactattagtgaatctaatgaactgtgtgaaggc
ttccgtaagtccgataaagcccgccaatatgttgatgatttggtcaagagttcaaaattt
cctccagcagagtcatttgatgattatgttgctaggtttctctttcctggtataagtggg
aataggaataaagcatttttcttaggttacatggtcaaataccttctaatggcttttact
gggaagctcaaatgtgataatagggatgctttccggaacaagaggttggagctacctggt
gaattgcttggaagagaacttcgggcacatcttaggcatgcagagagactcatggttaag
gccatgcagagagatctgaatagtgaccgcgatttacagtttcctctgggctatcttgat
cctacaattatcactaatggtataaatcgtgccttcgctactggttcttggtgtcatccc
tacaaaagaaatgaaagatgctcaggagttgttgcaacgctaaggagaacaaatcctctt
caaatgatgtcagacttgaggaaaagtcgtcagcaagttgcttatgctgggaaagctggt
gatgcaagatatcccaatccatcctactggggaaaaatgtgttttatgtccacacctgat
ggcgaaaactgtggacttgtgaaaaatctggctgttactgctattgttagctcaagagtg
gtacaaccattgattgacagatttgtttcttgtggaatgaataaactcgatgaaattcct
gctggacagattcctaaaatggacaaaatcttcctgaatggcaattgggtaggatcctgt
actgatccagcttcatttgtcatgcgtttaaggtgcatgagacgtggcaatctgattgat
ccacaggttgaaatcaaaagggacaagcaccaaattcctggggaagtacgagtgttttct
gatgcagggcgaatcctcagacctcttcttgtggttgagaacctaaataaaattagaaaa
ccgaaggatggttcatactcttttcaggcactaatgcaacaagaaataattgagtacatt
ggtgttgaagaggaggaagacatactatgtgcctggggaatcaggcacctatttccgggc
agtggagaggacttttctggttatactcactgtgagctagatctttcttttctgctggga
ttaagttgtagtcttatcccttttgcaaatcacaattttgctcgaagggtactgtaccag
tcagaaaaacactcacagcaagctattggatactccacaacaaatcaacttaccagagtc
gatactctttcccatcaactttactaccctcagagaccccttttcaaaacagttacagct
gattgtattggtagatctgattatactattggaagaacagatgattttgctaggccagaa
tatttcaatggacaaaatgcgattgtggccgtcaatgttcatcagggatttaaccaagag
gactctctggttatgaatagagcttctcttgaacggggtatgtttagaacagaactcatc
aggagctataaggcagatgtagagaccaaagagcccgccaaacgattgaaactgaaggaa
aaggtagactttggtaaaatgcaaagcaagagagggcgggttgacagtcttgacgatgat
ggattaccgtacgtgggtgcaagtcttcagagtggtgatatcgtcattgggaaagtgtcg
gaatctggtgaagaccatagtatcaagctgaagcatactgaaaagggaatggtccagaga
gtgctgctctcagccaatgacgaggagaagaattttgctgttgtaactttaagacaggtt
cggtctccttgcgttggagataaattttctagcatgcatggccagaaaggtgttattggt
tttctagaatcccaggagaacttcccttttacttgccaaggaatagttccagatattgtg
ataaacccacatgcctttcctacccgtcaaactccgggccagctgcttgaagctgctttg
gggaagggaatcgctcttggtagtgcaatgagatatgcaacaccgttcaccacagcatca
cttgaagtgatctcggagcaattgcataaagctggattttcaggaggcggtactgaaagt
gttctgaatggccaaactggcgaaaggatgcactcattgattttcatgggtcccaacttt
taccagaggttgacgcacatggctgaagacaaggtaaaattcaggaatactgggccagtg
caccctctcacaaggcaacctgtggcagacaggaaaaggtttggaggagtgaagtttgga
gaaatggagcgtgactgcctccttgcccatggggcagctgccaacctccatgagcggctc
ttcatgcttagtgactttgcacagatgcacatctgccaaacatgtcagcgggctgcaaac
gttgtcatgagggctatccctggaggaaagaagatccgaggcccatactgcggattctgc
cggtcttcagagaataaagttaggatcgccgtgccctacggtgcaaagctgctctaccag
gagctcttcagcatggggatctgcctcaagttcaagacagaagtctgctag

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