KEGG   Brachypodium distachyon (stiff brome): 100822006
Entry
100822006         CDS       T01717                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100822006
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdi03021]
    100822006
Enzymes [BR:bdi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100822006
Transcription machinery [BR:bdi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     100822006
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 100822006
NCBI-ProteinID: XP_003564776
UniProt: I1HCX0
LinkDB
Position
2:complement(4274114..4284050)
AA seq 1213 aa
MEEPPRDNAHSKNGPEPELEPMILDDNEESRSHTMDDSNGQSSMDIDIEGSSMGEQIPAD
MNLTSLEKFCKEASRSFFEEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPGYDPSKK
GPGGWRHAIIKFGKVKLEEPVFWSGKIGIDEESLKLKPRHARLQNMTYSSKMEVEVNIQV
YSMEKSDKAKTGNDHFGHKRDIINETHWVTIGRLPVMVNSDLCWLHKLGESDCLFDSGGY
FLIKGMEKIFIAQEQRCLTRIWVADRPCWNVSYLSEMKRRRVYIKLIDSTTNNDLNGAKI
ISISFLYANMPIWLLFFALGVSSDKEVFDMIDMKDCDASVINAISATIRESDELCEGFRQ
SDKARKYVDDLVKSSKFPPAEPFTDYVAKYLFPGISGNRNKAFFLGYMVKCLLMAFTGKR
KCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQRDLNSDRDLQFPLRYLDASI
ITNGINRAFATGSWSHPYIRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKVGDAR
YPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEISAKE
IPKMDKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVFSDAG
RILRPLLVVENLNKIRKSKDRHYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLFPSSGE
KVSGYTHCELDLSFLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNPLTRVDTH
SHQLYYPQRPLFKTVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSL
VMNRASLERGMFRTEHIRSYKAEVETKEPIKRLKLKEKVDFGKMQSKRGRVDNLDDDGLP
YVGASLQSGDIVIGKVSESGEDHSIKMKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSP
CVGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAALGKG
IALGGAMRYATPFTPASLEVISEQLHKAGFSRGGAESVINGRTGERMHSLIFMGPNFYQR
LTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFML
SDFSQMHICRTCERVANVVMRGVPGGKRIRGPYCGFCRSSENTVRIAVPYGAKLLYQELF
CMGICLKFQTEIC
NT seq 3642 nt   +upstreamnt  +downstreamnt
atggaagagccaccaagggacaatgcgcactcaaaaaatggccctgagcctgagctggaa
cctatgatactggatgacaatgaggagagtagatcccataccatggatgattcaaacggg
cagtcttctatggatattgacatagaggggtcttcaatgggagagcagattccagctgac
atgaacttgacaagcctagagaaattttgcaaggaagcatcaaggtcattttttgaggaa
atcggtctgattagccaccagataaactcttataatgagtttgtctcgcatgggctccag
gagctttttgattcgctaggcgaagtgactgttgaacctggctatgatccttcaaagaaa
ggaccaggtggttggaggcatgccatcatcaagtttgggaaagtgaaacttgaagagcct
gtattctggtctggcaaaattggtattgacgaggagtcactcaagctcaagccaagacat
gctcggctccaaaatatgacatattcctccaaaatggaagtagaagtgaatattcaggtt
tattctatggagaaaagtgataaggctaaaacagggaatgatcattttggtcacaagaga
gatattattaacgaaactcattgggtgactattggccgccttccagttatggttaattca
gatttatgctggctgcataaacttggggaaagtgactgcctttttgattctggtggatac
tttttgatcaagggaatggagaagatatttatcgcacaagagcaaagatgcttgaccagg
atttgggttgctgatcgaccttgctggaatgtctcttatttgtctgaaatgaaacgaaga
cgcgtatatataaaactgattgattctacaaccaacaatgatttaaatggggccaaaatc
atttccatttccttcttgtatgccaatatgccaatttggttacttttttttgccctggga
gtatcatctgataaggaagtatttgatatgatagatatgaaagactgtgatgcttctgtt
atcaacgcgatatctgcaactattcgtgagtctgatgaactgtgtgaaggctttcgccag
tccgataaagctcgcaaatatgttgatgatttggtcaagagttcaaaatttcctccagca
gagccttttactgattatgttgctaaatatctctttcctggtataagtgggaacaggaat
aaagcatttttcttaggttacatggtcaaatgccttctaatggcttttactgggaagcgc
aaatgtgataataaggatgatttccggaacaagagactggagctacctggtcaattgctt
ggaagagaacttcgtgcacatcttaggcatgcagagagactcatggttaaggcaatgcag
agagatttgaatagtgaccgtgatttacaatttcctctgcgatatcttgatgcgtcaatt
attactaatggtataaatcgtgcattcgctactggttcttggagccatccctacataaga
aatgaaagatgctcaggtattgttgcaaccctgaggagaacaaatcctcttcaaatgatg
tcagacttgaggaaaagtcgtcagcaggttgcttatgctgggaaagttggtgatgcaaga
tatcccaatccatcctactggggaaagatgtgttttatgtccacacctgatggtgaaaac
tgtggactcgtgaaaaatctggctgttactgctattgttagctctagagtggtacagcca
ttgattgacagatttgtttcttgtggaatgaataagctcgatgaaattagtgctaaggag
attcctaaaatggacaagatcttcctgaatggcgattggataggatcctgtactgatcca
gcttcatttgttatgcgtttaaggtgcatgagacgcgccaatctgattgatccacaggtt
gaaatcaaaagggacaagcaccaatttcctggggaagtacgggtgttttctgatgcaggg
agaatcctcagacctcttcttgtggtcgagaacctaaataaaattagaaaatcgaaggac
cgtcattacacttttcaggcactattgcaacaagaaataattgagtacattggtgttgaa
gaggaggaagatatacaatgtgcctggggaatcaggcacctgtttccgagcagtggagag
aaggtgtctggctatactcactgtgagctggatctttcttttctgctgggattaagttgt
ggtcttatacctttcgcaaatcacaattttgctcgaagagtactgtaccagtcggaaaaa
cattcacagcaagctattggatactccacaacaaatccacttaccagagttgatactcat
tcccatcaactttactacccgcagagaccccttttcaaaacagttacagctgattgtatt
ggcagatcagattatactattggaagaaaagatgactttgctaggccagaatatttcaat
ggacaaaatgcaatagttgcagtcaatgttcatcagggatttaaccaagaggactccctg
gttatgaacagggcttctcttgaacggggtatgtttagaactgagcacatcaggagctat
aaggcagaagtagagaccaaagagcccatcaaacgactgaaactgaaggaaaaagtagac
tttggtaaaatgcaaagcaagagaggacgggttgacaatcttgatgatgatggattacca
tacgtgggtgcaagtcttcagagtggtgatatcgtcatcgggaaagtgtcagaatctggc
gaagatcatagtatcaagatgaagcatacggaaaagggaatggtccagagagtgttgctc
tcagccaatgacgaggggaagaattttgccgttgtaactctgagacaggttcgatcacct
tgcgtcggagataaattttctagcatgcatggccagaaaggtgttattggttttctagaa
tctcaggagaacttcccttttacttgccaaggaatagttccagatgtggtgataaatcca
catgcctttcctacccgtcaaactccaggccagctgcttgaagctgctttgggaaaggga
atcgctcttggtggtgcaatgcgatatgcaacaccattcaccccagcatcacttgaagtg
atctcagaacaattgcacaaggctggattttcgagaggcggagctgaaagtgttatcaat
ggccgaacaggcgaaagaatgcactcattgattttcatgggtcctaacttttaccagcgg
ctgactcacatggcggaagacaaggtaaaattccggaacactgggccagtgcaccccctc
acaaggcaacctgtggcagacaggaaaagatttggcggagtgaagtttggagaaatggag
cgggactgcctccttgcccacggggcagctgccaacctccatgagcggctcttcatgctc
agcgacttctcacagatgcacatttgccgaacatgtgaacgggtggcgaacgttgtcatg
aggggtgtccctggaggaaagaggatccgaggcccgtactgcggattctgccgatcttca
gagaatacagttaggatcgccgtgccgtacggtgcgaagctcctctaccaggaactcttt
tgcatggggatctgcctcaagttccagacggaaatctgttag

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