Paraburkholderia atlantica CCGE1002: BC1002_4041
Help
Entry
BC1002_4041 CDS
T01217
Name
(GenBank) diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BC1002_4041
Enzymes [BR:
bge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
BC1002_4041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_8
PAS_3
GGDEF_2
PAS_10
Motif
Other DBs
NCBI-ProteinID:
ADG18047
UniProt:
D5WHV2
LinkDB
All DBs
Position
2:927822..929825
Genome browser
AA seq
667 aa
AA seq
DB search
MSDELHDQVLHARFGTSSPCWRLAAASDTLELVPAHGHTAAGVAIPLTFFQASQVRALSG
VTSHVVVDVQLDGAPLRLHLVGKKLDCHRWGGTASAHADTESVARALLHGLSFAEQVVSE
VNSVVVIVDRHGRIQRFNRLAEELTGLKEEDIIGRSVWTLFMSSDDGSVSNQVSAHFFNR
GEPYEIERRIKTVHGERLFLFRNKFVRSGSGIEDQFLICSGTDITEQRLAQERLIEQATT
DPLTGLANRNAIQERIQIAIEQAAPGETVGVLFLDLDNFKKVNDHYGHVFGDRLICDVSD
AIRNCLNPGDSLARLGGDEFIVLAAKGSAHGLEDIAQRILDRMRMPFAVGLVEVYTGCSI
GIARWPEHGETLESLIRSADTAMYVAKDEGKRTHRVFSPDMNRRVAEFMWLDTNLRRGLE
EGQFALHYQPKLNLATGAVQGAEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVME
TAAKQAARWKAAGYDLRVAINVSARQLTDTAVVRHFTEALQHASLDPCLIDLELTESCLI
ENEAAAIELIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFTRSIHADMKAQ
ALVRSMVAVAQELDFQVVAEGIETEAEEAFMKGLGVDYVQGFLYARPMPATDFERWLLDR
RKLRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgagctacacgaccaggtgcttcacgcgcggttcggcacgagcagtccttgc
tggcgcctggcggcggccagcgacacgctggaactcgtgccggcgcacggccacacggct
gcgggcgtcgccattcccctcacgtttttccaagcctcgcaggtccgcgcgctgagcggc
gtcacctcgcacgtagtcgtcgacgtgcagctggacggcgcgccgctgcggctgcatctg
gtcggcaaaaaactcgattgtcatcgctggggcggcaccgcgtcggcccatgccgatacg
gaatccgtcgcgcgcgcgctgctgcacggtctgtcgttcgccgaacaggtcgtctccgag
gtcaattcggtcgtcgtcatcgtcgaccggcacggccggatacagcgctttaaccggctc
gccgaggaactgaccgggctcaaggaagaggacatcatcggccgcagcgtctggacgctg
ttcatgtcgtccgacgacggctcggtctcgaaccaggtcagcgcgcacttcttcaaccgt
ggcgaaccgtacgagatcgaacggcgcatcaaaacggtgcatggcgagcggctgttcctg
tttcgcaacaagtttgtgcgcagcggcagcggcatcgaagaccagttcctgatctgctcg
ggtaccgacatcaccgagcaacggctcgcacaagagcgtctgatcgagcaggccaccacc
gacccgctcaccggcctcgccaatcgcaatgcgatccaggagcgcatccagatcgcgatc
gaacaggccgcgcccggcgaaaccgtcggcgtgctgttcctcgatctcgacaacttcaag
aaggtcaacgatcactacggccacgtgttcggcgaccggctgatctgcgatgtgtcggac
gcgatccgcaactgtctgaatccgggcgactcgctcgcgcgcctcggtggtgacgaattc
atcgtgctcgccgcgaagggctccgcccacggcctggaagacatagcgcaacgcattctc
gatcgcatgcgcatgccgttcgcggtcgggctcgtcgaggtctataccggctgctcgatc
ggcatcgcgcgttggcccgagcatggcgaaaccctcgaatcgctgatccgttcggccgac
accgcgatgtacgtcgcgaaggacgaaggcaagcgcacgcaccgcgtgttctcgccagac
atgaaccgccgcgtcgcggagttcatgtggctcgacacgaatctgcgccgcgggctcgag
gaaggccagttcgcgctgcactatcagccgaagctgaacctcgccacgggcgccgtgcaa
ggcgcggaagcgctggtgcgctggaactcgccggagcgcgggcagatcatgccggccgaa
ttcatccgttatgcagaggaatccggcttgatcggcgtgctcggccgctgggtgatggag
accgccgcgaaacaggcggcccgctggaaagcggccggctatgacctgcgcgtcgcgatc
aacgtgtcggcgcgacagctcacggatacggccgtggtgcgccatttcaccgaggcgttg
cagcatgcgagcctcgacccctgcctgatcgatctcgagttgaccgaaagctgcctgatc
gaaaacgaagcggccgcgatcgaactgatcaagcagttccgccagctcggcgcgcaggtg
catctggacgacttcggcaccggctactcgtcgctgtcgcaactcggccgtattccgctc
gacgtgatcaagctcgaccgcagcttcacgcgctcgatccacgctgacatgaaggcacag
gcgctagtgcgctcgatggtcgcggtcgcgcaggagctcgatttccaggtagtcgccgag
gggatcgaaaccgaagcggaagaagccttcatgaagggcctgggcgtcgattacgtgcag
ggcttcctgtacgcgcggccaatgcccgccaccgacttcgagcgctggctgctcgacagg
cgcaagctcaggctgatcgcctga
DBGET
integrated database retrieval system
