Biomphalaria glabrata (bloodfluke planorb): 106061006
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Entry
106061006 CDS
T07368
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bgt
Biomphalaria glabrata (bloodfluke planorb)
Pathway
bgt03020
RNA polymerase
bgt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bgt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106061006
09124 Replication and repair
03420 Nucleotide excision repair
106061006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgt03021
]
106061006
03400 DNA repair and recombination proteins [BR:
bgt03400
]
106061006
Enzymes [BR:
bgt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106061006
Transcription machinery [BR:
bgt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106061006
DNA repair and recombination proteins [BR:
bgt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106061006
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_6
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
106061006
NCBI-ProteinID:
XP_013074505
UniProt:
A0A2C9JNA1
LinkDB
All DBs
Position
Unknown
AA seq
1922 aa
AA seq
DB search
MTVAAGYTGDSNAPLRDVKKIQFGILGPEEIRRMSVTDNGGIKYPETMEGGRPKLGGLMD
PRQGVVDRTSRCQTCAGNMTECPGHFGHIELAKPVFHVAFLTKTIKILRCVCFFCSKLLM
DPSHPKMKDVISKSKGYPQKRLAHVYNLCRTRKICEGGDEMEKRKEEEEGGGENQENEAP
KSHGGCGRYQPNIRRNGLELMAEWKHTNEESQEKKIQVTAERVLEIFKRITDEECIVLGM
DPKYARPDWMIVTVFPVPPLPVRPAVVMFGSARNQDDLTHKLSDIVKANNQLRRNEQNGA
AAHIIQEDTKMLQYHCATLVDNEIPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKR
VDFSARTVITPDPNLRVDQVGVPRTIAQNMTFPELVTPFNIDRMQNLVRRGANQYPGAKY
IVRDNGERIDLRYHPKASDIHLQIGYKVERHMIDNDVVVFNRQPTLHKMSMMCHRVKVLP
WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIYNLAAVPRMIITPQANRPVMGIV
QDTLCAVRKMTKRDVFIDRAQMMNLLMFLPTWDGRMPQPAILKPVPLWTGKQLFSLIIPG
RVNCNRTHSTHPDSEDNGPYKWISPGDTRVLIEDAELISGIICKKALGTSAGSLVHIVFL
EMGHDIAGEFYGNIQTVVNNWLLIEGHSIGIGDTIADQQTYQDIQDTIRNAKNDVIDVIE
KAHNDELEPTPGNTLRQTFENQVGYFITXVVFKNFNDDHGCYNLTCEVCCCLSTLNCVCI
QVIACVGQQNVEGKRIPFGFRYRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG
GREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDACWVE
FQSIPTLKPSDKAFEKRFRFDATNERXVLFQEVTLSYLLILITLNVNNDLHPLKVIEGVR
DLCRRLVIVVGEDRISYQANENATLLMKALIRSTLCTKRVAEEHCLTSEAFEWVLGEIET
KFQQAMAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKP
KTPSLTVYLLGQAARDAERCKDVLCRLEHTTLRRVTANTAIYYDPDPMNTVIAEDQEWVS
IYYEMPDFDASRISPWLLRIELDRKRMTDKKLTMEQISEKIQSGFGDDLNCIFNDDNAEK
LVLRIRIMNSDNTKYQDEEEVVDKMEDDVFLRCIEANLLSDMSLQGIEAIAKVYMHLPNT
DDKRRIHITEEGEFKAVSEWILETDGSSLTKVLSERDVDPVRTYTNDIVEVFDTLGIEAV
RKAIEREMNHVISFDGSYVNYRHLALLCDVMTSKGHLMAITRHGINRQETGALARCSFEE
TVDILMEAASHAEIDPMKGVSENIMLGQLAKIGTGCFELLLDAEKCKYGMEIPSQLGPGQ
LAGGAGTGMFFGAAGSPTSSMSPQMTPWGQVGTPGYASAWSPGVGSGMTPGGAGFSPSAA
SEAGYSPAYSPGWSPQPGSPGSPSSPYIPSPRGASSPGYSPSSPVYLPSSPAIATPQSPS
YSPTSPSYSPSSPGYSPTSPKYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPGYSPTSPSYSPSSPNYSPTSPSYSPTSPSYSPTSPSYSPSS
PSYSPSSPSYSPSSPNYSPSSPSYSPSSPKYSPSSPSYSPTSPSYSPSSPQYSPSSPKYS
PSSPQYSPSSPQYSPSSPSYSPSSPKYSPTSPRYSPTSPDYSPSSPHYSPTSPSYSPSSP
NYSPASPTYSPSSSPKYSPTSPTSSPASPGYSPSSPAYSPNTPHYSPTSPHYGTDLEDDD
QP
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcgcagctggatacactggagactcaaacgccccgttaagagatgtgaaaaag
attcaatttggaatactgggtccagaagaaatacgtcgcatgtctgtcacagacaatgga
ggtatcaaatatccagaaacaatggaagggggacgccccaaacttggtggccttatggat
cccagacaaggtgtggtagatagaacttccagatgtcagacctgtgctggcaacatgaca
gaatgccctggtcactttgggcacatcgaactcgccaagccagtgtttcatgtggcattc
ttgacaaaaacaataaaaattctcagatgtgtttgctttttctgttccaaactgcttatg
gacccatcacaccccaaaatgaaagatgttatcagtaaatccaaaggttaccctcagaag
cgtttggcacatgtttacaatctatgccgaacacgaaaaatttgtgaaggaggagatgaa
atggagaaaaggaaagaggaggaggaaggtggaggtgaaaaccaagaaaatgaagcccct
aagagtcatggaggttgtggtcgttatcagcccaacatcagaagaaatggcctggaactt
atggctgaatggaagcacaccaatgaagaatcccaggaaaaaaaaatccaagtcactgct
gagagggtgctggaaatctttaagaggatcacagatgaggagtgcatagtacttggcatg
gaccctaagtatgcacgtcctgactggatgattgtcacagtgtttccagtgccgcctctc
cctgtcaggccagcagtagttatgtttggctcagcaagaaatcaggatgacttgacgcac
aaactgtctgatattgtgaaagccaacaaccaactaagaagaaatgagcagaatggtgca
gcagctcatattattcaagaagatacaaaaatgttacagtatcattgtgccactctggtt
gacaatgaaattcctggcctgccaaaggctgtgcaaaagtctggtagacctctaaaatct
gtcaagcaaagattgaaaggtaaagagggcagagttcgtggaaatctcatggggaaacgt
gtggatttttcagccagaactgtcatcacaccagaccctaacctaagagttgaccaggtc
ggtgtacccagaactattgcccaaaacatgacattcccagagttggtcactccctttaac
attgacaggatgcagaatctggtcaggaggggtgccaatcagtaccctggtgccaaatac
attgtccgagacaatggtgagcgcattgatttgaggtaccaccccaaagctagtgacata
cacttacagataggctacaaggtggagagacacatgatagacaatgatgtggtggtcttc
aacagacagcccaccctgcacaagatgagtatgatgtgtcatagggtgaaagtattaccc
tggtctacctttaggcttaatctcagtgtaacaacaccatacaatgctgactttgatgga
gatgagatgaatctgcatctgccgcagtctttggagacaagagcagaaatttacaacttg
gctgctgttcctcgtatgatcatcacaccacaggctaatagacctgtcatgggtattgta
caggacacactttgtgcagtcagaaaaatgactaaaagagatgtcttcatagacagggcc
caaatgatgaatctgttgatgtttctgcccacttgggatggacgcatgcctcagccagcc
attctgaaacctgtaccactgtggacaggtaaacagttattctcccttatcatcccaggc
cgtgtcaactgtaacagaacccactctacacatccagactctgaggacaatggtccttac
aagtggatctctccaggagataccagggtgttaattgaagatgctgaactcatcagtggc
atcatttgtaaaaaggctctgggtacttctgctggctcattggttcacattgtgttcttg
gagatgggtcatgatatagctggagagttctatggcaacattcagacagtggtcaacaac
tggctgcttatagagggccacagcattggtattggtgacactattgctgaccaacagact
taccaagatattcaggacactatcaggaatgctaagaatgatgtgatagacgttattgaa
aaagcacacaatgatgaacttgaacccacacctggtaatactcttcgacagacttttgaa
aatcaggttggctactttatcacttgagtagtctttaagaatttcaatgatgatcatggc
tgctacaatttgacttgtgaagtctgttgttgtctttctacactaaactgtgtttgtatt
caggtcattgcttgtgtgggtcagcagaacgttgaaggaaaacgtatcccatttggtttt
agatatcgcacactacctcatttcatcaaagatgattatggtcctgagtccagaggtttt
gtggagaactcttatctagccggtctgacgccttctgagttctacttccatgctatggga
ggtcgtgaaggtcttattgatacagctgtcaagactgcagaaactggctacattcagcgt
cggttgatcaaggccatggagagtgtgatggtcaaatatgacggcactgtgagaaatcaa
gttgaacaactggttcagctgaggtacggtgaggatggacttgatgcatgctgggtagag
ttccagtctattcctactcttaagccatcagataaagcatttgaaaaaagattccgtttt
gatgctacaaatgagaggtaggttttatttcaagaagttacattaagttatttacttatt
ttaattacgttgaatgtcaataatgatctgcatcctctgaaagtcatagaaggtgtcaga
gacttgtgccgtaggctagttattgtagtgggtgaggacaggatctcttaccaagctaat
gagaatgccactctgttgatgaaggctttgattagatcaacattgtgcaccaagcgtgtg
gctgaagagcactgtctaacttctgaggcatttgaatgggtgcttggtgaaatagaaacc
aagttccagcaggcaatggcacatcctggagaaatggttggcgctctggctgcccaatct
cttggagaacctgcaacccagatgacactgaacactttccattatgctggtgtatctgcc
aaaaacgtcacacttggtgtgcctcgtttgaaagagattataaatatctccaagaaaccc
aaaaccccatctctcactgtatacctattgggtcaggctgcacgtgatgcagagagatgc
aaagatgtcttgtgtcgcctggagcatacaacacttcgtagggtcacagccaacacagct
atttattatgaccctgacccaatgaacactgtgattgctgaagaccaagaatgggtcagt
atctattatgagatgccagattttgatgcctcaagaatatctccttggcttctgcgtatt
gaacttgacagaaagcgtatgacagacaaaaaactcaccatggaacagatctctgagaaa
attcagtctgggtttggggatgatctgaactgtattttcaatgatgataatgctgagaag
ttggtactgagaataagaattatgaattcagacaataccaaataccaagatgaagaagag
gtggttgacaaaatggaggatgatgtttttctgcgttgtattgaagccaatcttttgtct
gacatgtctctacaaggcattgaagctattgctaaagtttacatgcatctaccaaataca
gatgacaaaagaagaattcatattactgaagagggtgagtttaaagctgtgagtgagtgg
atcttagaaactgacggttcaagtttaactaaggtactcagtgagagagatgtagaccct
gtcaggacctacacaaatgacattgtggaagtttttgataccttgggtattgaagctgta
cgtaaagctattgaacgtgagatgaaccacgtcatctcttttgatggttcttatgtcaac
tatcgccatttggccctgctttgtgatgttatgacctccaagggtcatttgatggccatt
actcgtcacggtattaacagacaggaaactggtgctctggctaggtgttcttttgaagaa
acggttgatattttgatggaggctgcttctcatgctgagattgatccaatgaaaggtgtc
tctgaaaacattatgttggggcagttggctaaaattggaactggttgttttgaattgctt
cttgatgcagagaaatgtaaatatggtatggaaattccatctcagcttggccctggacag
ttagcaggtggagctggaactggtatgttttttggtgctgcaggatcaccaacaagttca
atgtcaccacagatgaccccatggggtcaagttggcacaccaggctatgctagtgcctgg
tctcctggagtaggcagtggcatgacaccaggtggtgctggattctctccctctgctgcc
agtgaagctggctactctccagcctattctcctggctggtcaccacagcctggatctcct
ggttctcccagctctccttacattccatctccacgtggagcttcctcgcctggctactca
ccatcatcgccagtctacttgccaagttccccagccattgctacaccccagagcccaagc
tactctccaacttccccatcttactccccctccagccctggctattcaccaaccagtcca
aagtattcaccaacttctccctcttactctcccaccagcccgtcttattcccccacatct
ccttcttactcaccgacgtccccctcttattccccaacctccccctcctattcacctacc
tctccaagctacagcccaacaagcccctcctactcgcctacatccccttcctattctcca
accagcccatcttacagtcctacaagcccatcttattcccctacaagcccatcttattct
cccacttctccttcatactccccaacctctccttcttactctcccacttccccatcatac
tctcccacttccccatcttattccccaacttccccatcttattctcccaccagtcctggg
tacagtcccacaagtccatcctattctccatcttcacccaattattccccaacttctcct
tcttactctcccacgtctccttcatactcccctacatccccatcctattctccctcctcc
ccttcatactctccatcttctccatcttactctccctcctcaccaaactactctccctca
tccccatcatactctcctagctctccaaagtacagcccatcttcaccatcttattctcct
acatcaccatcttactctccatcatctccgcagtactctccaagctcaccaaagtattcc
ccatcttcccctcagtattccccatcttccccacagtattccccatcttctccatcttac
tccccctcatcccccaaatattccccaacctcaccaaggtacagcccaacatccccagac
tactccccatcctccccacactactccccaacctctccctcttattccccttcatccccc
aactattctccagcttcaccaacctactctccatcatcatcgcccaagtattctcccaca
tcgcccacctcctcccctgcatcgcctggctactccccaagcagtccagcttactctccc
aacactcctcattacagccccactagccctcattatggcactgatctggaagatgatgac
cagccttaa
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integrated database retrieval system
