KEGG   Benincasa hispida (wax gourd): 120067035
Entry
120067035         CDS       T07258                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
bhj  Benincasa hispida (wax gourd)
Pathway
bhj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bhj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120067035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bhj03021]
    120067035
Enzymes [BR:bhj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     120067035
Transcription machinery [BR:bhj03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     120067035
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 120067035
NCBI-ProteinID: XP_038874337
LinkDB
Position
12:complement(33909384..33953688)
AA seq 1983 aa
MEEAPSCSSILDGEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCES
CGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKTKFPSKNIGFAER
LLSACCEDASQVSIREAKKADGASYLQLKVPSRTSLREGFWDFLERYGFRYGDNLTRTLL
PCEVKEMLKKIPNETRKKLAGRGYCPQDGYILQYLPVPPNCLSVPEISDGVTVMSSDPAV
SMLKKILKQVEIIRGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARYGVN
KELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVS
VHNIKYLQELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPP
TTHKHSLQALRVYLHDDHTVKINPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVE
KQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLDKAAAQQLAMFVSSYLPPPALLGVRSGS
LHWTALQILQTVLPACFDCHGDSYLIKNSDFLKFDFDRDAMPSLINEILTSIFFQKGPEE
VLRFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVISPLLYQLRSTFNELV
ELQLENHIRAVKVPFTNFILKLSSLGKLFDSKSDSAVNKVVQQIGFLGLQLSDKGKFYSK
TLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGL
TEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMKPYSLFPPGEPVGVL
AATAMSNPAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYC
NENAAYVVKSHLKKVTLKDAAVDFMIEYNRQPTPSGLGPGLVGHVHLNKMLLKELKIDMT
EVLRRCQETISSFRKKKKKIAHALRFSISEQCSFHQWNGEESTDMPCLIFWHETRDVHLE
RTAHILADVVFPLLSETIIKGDPRISSANVIWISPDSTSWQKNPSRWQDGELALDVCLEK
SAVKQNGDAWRNVLDCCLPVIHLIDTRRSVPYAIKQVQDLLGISCAFDQMIQRLSKSVSM
VSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRKCFERAA
EKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVRSSKS
EEPTSACLGEEIEDIMVEDEYGELTLSPEPLTSEKPVFEDSAEFEHCLDNYPGESKWEKA
PSLGAVSTGGGQWENNENGKATNSSDDNDWSGWGRKAEPDVANTNAQENTSNSAWDTTPS
WGNKATNTSNDNDWSNSGTKEVERDSFTSMEKTPKSGGWDTASTWGTKTKDVDGFKGDTA
PEKSNLWSGLQNEKAETQDAFHKKVEMTSKSRGWEDKAWSRGSSKTEDNWSSQVKDKAES
FQVQVQEVSSKTNGWGSAGSWRKNSGDDHQSEAGWNDGQASMDLDKVSDRWDSRATDRME
SQRTSSWGSQTVCDSKDSFPSKAVEHSDAVLNHSWDQHKSPEASQGFGNDVWGQQKSREV
IKPSHVNNESNQRGWGSQIESNEGSGHGFDQVTSEHKSSDTGGWDSQEKMDKPWDKQKST
EASQSWGSQEKMDKPWDTQKSTEASQSWGSQNDSLGSWGQPQRAAEEFSRGSQDDSNTQF
SQLKPPETSLGWEQKSPEVSHGWGSHKESSEQTSSHGWDKKNQGSKGWGGNAGEWKNRKN
RPPKSPGVLNDDSNLRAIFTASGQRLDMFTTEEQDILADIEPIMQSIRKVMHQSGYNDGD
PLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSY
RKCLDNFIKGKYPDLAEMFVAKYFRKPRPNRNRDRNSASEENENKNIGGELTPIPEESQN
GSQ
NT seq 5952 nt   +upstreamnt  +downstreamnt
atggaggaggcaccctcttgctcatctattttagatggggaaatagtgggaataagattt
tcattggccaatggtcaagaaatttgtattgcagctatcagtgattgccctattacccat
gctagtcagctctcaaatccatttcttggtctgccaattgaatttggaaaatgtgaatca
tgtggtacttctgaacctgggaagtgtgaaggccattttggatatattgaattaccaatt
cccatttatcatcccaatcacataactgaattgaagaaaatgttaagtttgctgtgtttg
aagtgcttaaaaatgaaaaaaaccaagtttccttcgaagaatattggttttgcagaaaga
ttgttatccgcatgttgtgaggatgcttcacaagtttctattcgagaggcaaaaaaagca
gacggtgctagttacttgcaactaaaagtaccatctaggacttcactacgagaaggattt
tgggattttttagaaagatatggtttccgttatggtgataatctcactcgaaccttgctc
ccttgcgaggtgaaggaaatgctgaaaaaaattcccaatgagaccagaaaaaagcttgct
ggcagaggttattgtcctcaggacggatatatcttgcaatatttaccagtccctcccaac
tgcttgtcggtaccagaaatttctgatggtgttactgtcatgtcttcggatccagctgtt
tcaatgctgaagaaaattcttaagcaagtggaaatcattagaggttctaggtctggtgct
ccaaattttgaatcccatgaagtagaagctaatgacttgcaattggccgttgatcaatat
ctccaagttagaggaactgttaaggcatctcgtggcatagatgcacgatatggtgttaat
aaagagttaaatgatccttccactaaagcatggcttgagaaaatgagaactttgtttatt
cgaaagggctctggtttctcttctcgcagtgtgattactggagatgcttacaaactagtt
aatgaaattggcgtaccttttgaagtagcacaaaggatcacattcgaggagagggttagt
gtgcataacataaagtatttacaggaactggtggacaagaagttatgtttaacctacaga
gatggttcttctgcctattcacttcgtgaaggttcaatgggccatacttatctgaaacct
ggtcaaatagttcatcggcggatcatggatggagacattgttttcatcaatcgacctcca
actactcataaacattctttgcaagctctgagggtgtatctgcacgatgaccacacagtc
aagatcaaccctctaatatgtggacccttgagtgcagattttgatggtgattgtattcat
ctattttatccccagtccattgcagcaaaagctgaggtgttgggacttttctctgtggaa
aaacagctgcttagctctcacagtgggaatctgaatttgcagttggctaatgattcattg
ttgtctctcaagatgatgttcaggaaatatttcttggacaaagctgctgcacagcaactg
gccatgtttgtttcttcgtatctgccacctcctgccttattgggagttcgttctggaagt
cttcattggactgctttgcagatactacaaactgtgttgcctgcatgttttgactgccat
ggggatagttacttgataaagaatagcgattttcttaaatttgactttgacagagatgct
atgccatcattaattaatgaaattttgacgtcaattttttttcagaagggtcctgaagag
gttctgagattttttgattctttacagccgttattgatggaacatatattttcagaaggt
ttcagtgttggcttggatgattattccatgcccatggcatttttacaagctcttcaaaag
aatattcaagttatatcacctttgctgtatcagttaaggtcaacattcaacgagctggtg
gagttgcagttagagaatcacattcgagcagttaaagttccatttacaaactttatctta
aaattatcttcattagggaaattatttgactccaaaagtgattcagctgttaacaaggtg
gttcaacaaattgggtttcttggattgcagctttctgacaagggaaaattttattccaag
acattgatcgaggatgtggcctctctgtttcacaatagatattcttctgataaaattgac
tatccttctgctgaatttggattggtcaaaggatgttttttccatggtttggatccatat
gaggaaatggtccattcaatttccacaagagaggtaatggttcgttcatcgagagggctt
actgaacctggaactcttttcaaaaacttgatggccatccttcgagatgttgttatttgt
tatgatggtactgtgaggaatgtttgtagcaattccatcattcaacttgaatatggaatg
aaggctggaatgatgaagccttatagtttatttcctcctggtgaaccggttggtgttcta
gcagctaccgccatgtcgaatcctgcttataaggcagttcttgattctactcctagcagc
aattcatcatgggacatgatgaaggagattcttctttgcaaggtcagttttaagaatgag
cctattgatcgtcgggtgatattatatctgaataattgtgcttgtggtagaaaatattgc
aatgaaaatgcagcgtatgtggttaagagtcacctgaagaaagtcacccttaaagatgcg
gcagtggatttcatgatcgaatataacagacaaccgactccctcagggcttggtcctggg
cttgttggtcatgtgcatcttaacaagatgctccttaaagaattgaagatagacatgact
gaagttttacgaagatgccaagagactatcagttctttcaggaagaagaagaagaaaatt
gctcatgctttacgattctctatcagtgaacaatgctctttccatcaatggaatggagaa
gagagcactgatatgccatgtctaatattctggcacgagacaagagatgttcatttggag
agaactgcacacatccttgctgacgtagtctttcccctgctttcagaaacaatcatcaaa
ggtgaccctcggatcagttctgcaaatgtgatctggattagtccagattcaaccagctgg
caaaaaaatccttccaggtggcaggatggtgaactagcgttggatgtctgtctggaaaaa
tcggcagtgaaacaaaatggtgatgcttggaggaatgtgctggactgttgcctacctgtt
attcacttgattgataccagaagatcagttccttatgccatcaaacaagttcaggatctg
cttggcatttcatgtgcttttgatcaaatgatccagcggctttcaaagtcagtgtcaatg
gtttcaaaaggtgttcttggagatcatctcattctgctggcaaacagtatgacatgcaca
ggaaatatgattggcttcaattcaggtggatataaagcattatctcgtgcactgaacatc
caagtaccatttacagaagcaactttgtttacaccaagaaaatgtttcgagagagctgct
gagaaatgtcataaggattctttatcaagcatagtggcctcctgttcttggggtaaacat
gttgctgttggtacaggatcaaggtttgacatcctttgggaccaaaaagagttaggatgc
aaacaagatgatgttgtggatgtttataactttttacacatggtgagaagtagtaaatca
gaagagccaacgtctgcatgcctaggtgaagagattgaggatataatggtagaagatgaa
tatggtgagttgactctgtccccagagcctttgacttctgagaagccagtttttgaagac
agtgctgaatttgaacactgtttggataattatcctggagaatcaaagtgggaaaaagct
ccatctcttggggctgtttccactggtggtgggcagtgggaaaataatgaaaatgggaag
gctactaactcgtccgatgacaatgactggtctggatgggggagaaaagctgaacctgat
gtggccaatacaaatgcccaagagaatacttcaaactctgcttgggatactacgccaagt
tggggaaataaagctactaatacttcaaacgacaatgactggtcaaattctggtacaaaa
gaagttgaacgggattcctttacttccatggagaaaactccaaaatctggaggttgggat
actgcatctacttgggggacaaaaacaaaagatgtagatggctttaaaggtgacacagcg
ccagaaaaatcaaatctgtggtctggtttgcagaacgagaaagctgaaacacaagatgcc
ttccataaaaaggttgagatgacctctaaatctaggggatgggaagataaggcttggtca
agaggaagttctaaaacagaagataattggtctagtcaggtgaaggataaagctgaatca
ttccaggttcaggtgcaagaagtttcttccaaaaccaatggctggggttctgcaggcagt
tggagaaagaattctggagatgatcatcaatctgaagcaggctggaacgatggccaggca
tcaatggacctagataaggtgtctgatagatgggatagcagggccaccgacaggatggag
agccagcggacatctagttggggttctcaaactgtttgtgactcgaaggatagctttcca
tccaaagccgtggagcatagtgatgcagttctcaatcattcttgggatcaacataaatca
ccagaggcttcccagggatttggcaatgatgtctgggggcaacagaaatcacgggaagtt
ataaaaccttcacatgttaacaatgaatcaaatcaacgtggctggggctcccaaattgag
tcaaacgaaggatcaggtcatgggtttgatcaagttaccagtgagcataaatcttctgac
acaggaggttgggactctcaggagaagatggataagccatgggacaaacagaaatctaca
gaggcttcacaaagttggggatctcaggagaagatggataagccatgggacacacagaaa
tctacggaggcttcacaaagttggggatcccaaaatgactcactgggttcgtggggacaa
ccccagagggcagctgaagaatttagtcggggatctcaggatgattcaaatacacaattt
agtcaactgaaacctccagaaacttcattaggttgggaacaaaaatcaccggaagtttct
catggttggggttctcataaagagtctagtgaacagacaagttcacatggatgggataag
aagaatcaagggtcaaaaggttggggtggaaatgctggggagtggaaaaataggaagaac
cgtcctccgaaatctcctggagttttgaacgatgattctaatttacgcgcaatatttact
gcatcaggacaacggttggatatgtttacaactgaagaacaagatattcttgcagatatt
gaacccataatgcaatctatcagaaaagttatgcatcaatctgggtacaatgatggggat
ccattgtctgctgaagatcagtccttcgtacttcaaagtgtattcaacttccatcctgac
aaagctgcaaaaatgggcgctggaattgaccacttcatggttagtcggcacagcagtttt
caggaaagcaggtgtttttacgttgtgacaaccgacggccataaagaggacttttcatat
cgtaaatgccttgataatttcatcaaaggcaagtatcctgacctggccgaaatgtttgtg
gccaagtactttaggaaacctcgtccaaatagaaaccgagaccggaactctgcatctgag
gaaaatgagaataaaaacattggtggagagctgactccaattccagaagaatctcaaaat
ggcagtcaataa

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