Benincasa hispida (wax gourd): 120079029
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Entry
120079029 CDS
T07258
Name
(RefSeq) protein CLP1 homolog isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120079029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120079029
Enzymes [BR:
bhj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
120079029
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120079029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
SRPRB
ATP_bind_1
DUF1611
AAA_29
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
120079029
NCBI-ProteinID:
XP_038889139
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Position
6:complement(9499582..9504305)
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AA seq
438 aa
AA seq
DB search
MAYGGPAIVAGSASTSSIRQVKLDRESELRIEVGNDSPLRLRLLSGNAEIFGTELPPEIW
LTLPPRLKIAVFTWYGATLEMDGATETDYTADETPMIGYVNVHAILEARRSRARASSSDD
SGSTQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPI
ELPIDPVEGIPLEMPLVYFYGHTTPSNNVDLYKVLVKELAQVLERQFTGNAESRAAGMVI
NTMGWIEGVGYELLLHAIDTLNANVVLVLGQEKLWSMLKDVLKNKPNVDVVKLQKSGGVV
SRNAKFRQKARSYRIREYFYGPANDLSPHSNIANFSDLFIYRIGGGPQAPRSALPIGAEP
AADPTRLVPVNINRDLLHLVLAVSFAKEPEEIISSNVAGFVYITDIDIQRKKITYLAPSA
GELPGKYLIVGTLTWIET
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatggtggtccggccattgtggctggttcagcttcgacttcgtctatcagacag
gtcaaactggatagagagagcgagctcaggattgaagttggaaacgactcgcctcttcgt
ctacggctgctttctggtaatgctgagatcttcggcactgagcttcctcctgaaatatgg
ctcactttgccaccaaggctgaaaattgccgtcttcacttggtatggagccacacttgaa
atggatggtgcgactgaaactgattatacggcagatgagacacccatgattggttatgtg
aatgttcatgctatacttgaagcgcgaagaagccgtgctagagcatcatcgtctgatgac
tctggttctactcagggtccaagggtaattgttgtggggcctaccgattcgggaaagagc
accttgtcaaggatgcttcttagttgggctgcaaagcagggttggaagcctacatttgtg
gacttggatattggccagggatctataacaattcctggatgcattgctgctacccccatt
gagttgcccattgatcctgtggaaggtatcccgctcgaaatgccactagtttacttttat
ggacatactactccaagcaataatgttgatctgtacaaagtgcttgtgaaggagcttgcc
caagtactggagagacaatttactggcaatgcagagtctcgagctgccggtatggttatc
aacacaatgggatggatcgagggtgtaggctatgagctgcttctacatgcaattgataca
ctcaatgcgaatgttgtcttggttttgggtcaggagaaactttggagcatgctcaaagat
gtactaaaaaacaagcctaatgtagatgttgtgaaacttcaaaagtctggtggtgttgta
tcccgaaatgctaaatttcgtcagaaagccaggagttacagaataagggaatatttttat
gggcctgcaaatgatctctcaccacactcaaacattgcaaacttcagcgatcttttcatt
tatcgcattggaggtggcccgcaggcccctcgttcagctctgcctattggtgcagaacct
gctgcagaccccacacgattagtgcctgtcaacattaatcgggatttgcttcatttggtt
cttgctgtttcatttgcaaaagaacctgaagaaattatctcaagcaatgttgctggattt
gtttatattactgacatcgacatccaaaggaagaaaattacatatcttgcgccatcggcc
ggggaacttccaggcaagtatttgatcgtgggaaccttgacctggatcgagacctga
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