Bordetella holmesii 44057: D558_0743
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Entry
D558_0743 CDS
T03379
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm03030
DNA replication
bhm03410
Base excision repair
bhm03420
Nucleotide excision repair
bhm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D558_0743 (polA)
03410 Base excision repair
D558_0743 (polA)
03420 Nucleotide excision repair
D558_0743 (polA)
03440 Homologous recombination
D558_0743 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhm03032
]
D558_0743 (polA)
03400 DNA repair and recombination proteins [BR:
bhm03400
]
D558_0743 (polA)
Enzymes [BR:
bhm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D558_0743 (polA)
DNA replication proteins [BR:
bhm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D558_0743 (polA)
DNA repair and recombination proteins [BR:
bhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
D558_0743 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D558_0743 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AIT25428
LinkDB
All DBs
Position
complement(707311..710031)
Genome browser
AA seq
906 aa
AA seq
DB search
MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVINMLRKLVLDHKAEYAACIFDA
RGKTFRDDLYPEYKSHRPPIPPDLAAQIEPIHAAVRALGWPVMAVEGVEADDIIATLARR
ATEEGLHTVVSTGDKDLAQLVNPQVTLVNTMTGEVLDEAGVVNKFGVPANRIVDYLMLVG
DAVDNVPGVTKVGPKTAVKWLSEFGSIDNLIQHADDIKGVAGSNLREAMVHFPLTRKLLT
VKEDCDLEGLITSAEDLKPKAPDQATLSALFDRYGFRTWLRELSGDAERLPSGDARAAEV
AYQAPAEQHYQIITEWHDLDAWMARVDKAGLVGLDTETTSLDEMQARLVGISMAIEPGVA
CYIPVAHRGPEAGTQLPRQEVIERLRAWLEDPARPKLLHHAKYDTHVFANEGVTLRGVTE
DTMLEAYVLESHRGVGLTDLAQRFLGRSGVSYEDLCGKGAKQIGFDEVAVDKAGYYSAED
ADFTLQLHQVLRPRVAADAGLERIYALELEVSRVLVVIERNGVKVDAAELGRQSHELGRE
MLSLEQKAYDLAGQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYP
LPQVLLDYRGLSKLKSTYTDKLPRMINSATGRVHTHYSQAAVITGRLASSDPNLQNIPVR
TEAGRRVREAFVAEHAGFLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATAAEVF
GVAVDEVTSEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARYPGVARYM
EDTRRLAREQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIKLAMVA
VQDWLVAENMQARLIMQVHDELVLEAPEAEVETLRVAVPRLMSDVATLRVPLIAEVGVGR
NWEQAH
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaccttgttgctggtagacggttcgagctacttgtaccgtgccttccatgcc
atgccggatttgcgcaatgcccagggggaaccgaccggggcgctctatggcgtgatcaac
atgctgcgcaagttggtcctggaccataaggcagagtatgccgcatgtattttcgatgcg
cgcggcaaaacgtttcgcgatgatctctatccggaatataaatcgcatcgcccgccgata
ccgcctgaccttgccgcccagatcgagccgattcacgccgccgtgcgcgccttgggctgg
ccggtgatggccgtcgagggcgtcgaggcggacgatatcatcgccacgctggcgcggcgc
gccaccgaagagggcctgcacaccgtcgtatcgacgggcgacaaggacctggctcagttg
gtcaatccccaggtcacccttgtcaacaccatgaccggcgaggtgctcgatgaggcgggc
gtcgtcaacaagttcggggtgcctgccaatcgtatcgtggattatctgatgctggtgggc
gatgccgtagacaatgtgccgggcgtgaccaaggtcggccccaaaacagccgtcaaatgg
ctcagcgaattcggctccatcgacaatctgatccagcacgccgacgacatcaagggcgtg
gcgggcagcaatctgcgcgaagcgatggttcacttcccgctgacccgtaagctgctgacc
gtcaaagaggactgcgatcttgagggcctcattacgtccgccgaggatctcaaacccaag
gcgcccgatcaggcgacgctgagtgcgctttttgaccggtatggcttccgtacctggctg
cgcgaactctcgggcgatgcagagcgtctaccgtccggcgatgcgcgtgccgctgaggtg
gcttaccaggcgcctgccgagcagcactatcagatcattacagagtggcacgatctggat
gcctggatggcgcgtgtggataaggctggcctggtcggtctggacaccgagacgacgtcc
ctggatgaaatgcaggcgcggctggtgggcatttccatggccatcgagcctggcgtggcc
tgctatataccggtggctcaccgaggacctgaagctggcacgcaactgccgcgtcaggaa
gtgatcgagcgtttgcgtgcctggctggaagatcccgcgcgacccaagctcttgcatcac
gccaagtacgacacgcatgtcttcgctaatgagggtgtgacgctgcgcggcgtgacggaa
gacaccatgcttgaggcctacgtgctcgaatcgcatcgcggcgtggggctgaccgatctg
gcgcagcgttttctgggccgcagcggtgtcagttacgaggatctctgcggcaagggtgcc
aagcagatcggctttgacgaagtggccgtcgacaaagcgggttattactccgctgaggac
gccgacttcaccttgcagctgcatcaggtcctgcgcccgcgtgtggcagccgatgccggc
ctggagcggatctatgcgctggagcttgaggtttcccgtgtgctggtcgtcatcgaacgc
aatggtgtgaaggtcgacgcggccgagctgggccgccagagccacgaactgggccgtgag
atgctgagcctggagcaaaaagcctacgacctggccggccagccctttaacctcaactcg
cccaagcaattgggagagattctgttcggccgcatgggtttgcccgtggtgcgcaagacc
gcgggcggcgcgccttccacggatgaggaggtgctctccaagctggcacaggactatccc
ttgccgcaggttctgctggactatcgcggcctgtcgaagttgaagtccacctataccgac
aagttgccgcgcatgatcaattcggcaaccggtcgggtgcacacgcattattcgcaagcg
gcggtcatcaccgggcgcctggcgtcttccgatcccaatctacagaacatcccggttcgc
acggaggccggccggcgcgtgcgcgaggcgttcgtggccgaacacgccggttttctgctg
tcggcggattactcgcagatcgagctgcgcatcatggcgcatgtctccgatgacgccaat
ctgcagcgcgcctttgccgcgggggaagatatccaccgcgccaccgcagccgaggtcttc
ggggtagcggtggacgaggtcacgagtgagcagcgccgcgccgccaaagccatcaatttc
ggcctgatatatggcatgggcgtctttgggctggcgtccaatctgggcatcacccgtgat
gccgcccaggcttacatcgatcgttatttcgcccgctatcctggcgtggcgcgttacatg
gaagatacgcgccgactggcacgcgaacagggctacgtcgagacggtgttcgggcggcgt
ttgcagttgcccgatatccgcgccgcatcggggccacggcggcagggagccgagcgcgct
gccatcaatgcgcccatgcagggcacggcggcggatctcatcaaactggccatggtggcg
gttcaggattggctggtcgccgaaaatatgcaagcgcgcttgatcatgcaggtgcacgat
gagctggtgctggaggcccccgaggccgaggtggagacactgcgcgtggccgtgccgcgc
ttgatgagcgacgtcgcgacgttgcgcgtgccacttatcgccgaggtaggggtgggtcgt
aactgggagcaggcccactga
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