Bordetella holmesii 44057: D558_2472
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Entry
D558_2472 CDS
T03379
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm00540
Lipopolysaccharide biosynthesis
bhm01100
Metabolic pathways
bhm01250
Biosynthesis of nucleotide sugars
Module
bhm_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
D558_2472 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
bhm01005
]
D558_2472 (rfaD)
Enzymes [BR:
bhm01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
D558_2472 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
bhm01005
]
Core region
D558_2472 (rfaD)
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
Polysacc_synt_2
Ldh_1_N
Motif
Other DBs
NCBI-ProteinID:
AIT27133
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Position
2335412..2336401
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AA seq
329 aa
AA seq
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MIIVTGAAGFIGSNLVRGLNRRGIQDIIAVDDLTQGDKFLNLVDCKIADYMHHEDVRELL
RAGKLPRLRAVLHQGACSDTTERNGRYMMDNNYRVTLEWFEYCQAQRVPLLYASSAAVYG
ASTVYVEDPANEGPLNVYGYSKLLFDQVLRTRMDKLTAQVVGLRYFNVYGPHEQHKGRMA
SVVFHNMNQFLSEGHVRLFAGWNGYPDGGQSRDFISVQDVVDVNLHFLEHPQISGIFNCG
TGRAQPFNDVAAAVVNSLRAENGEQALPLEELVSEGLIRYIPFPDDLKGRYQSFTQANVD
NLRAAGFTAPMRDVQTGVSEYVRYWRARK
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgatcattgtcactggcgcagccggtttcatcggcagcaacctggtgcggggtctgaac
cgccgcggcatccaggacatcatcgccgtcgatgatctgacgcaaggcgataaattcctc
aatctggtcgactgcaagattgccgactatatgcatcacgaggacgtgcgcgagctgctg
cgtgccggcaagctgccgcgtctgcgcgcggtattgcatcagggggcttgctcggatacc
accgagcgcaacggccgctacatgatggacaacaattaccgcgtcacgctggagtggttt
gagtactgccaggcgcagcgcgtgcccctgttgtatgcctcatcggcggccgtgtatggc
gcttcgacagtgtacgtggaagacccggccaacgaggggccgttgaatgtctacggctac
tccaagctgttgttcgatcaggtcttgcgcacgcggatggacaaactgacggcgcaggtc
gttggtctgcgttatttcaacgtctatggtccgcacgaacagcacaagggccgtatggcc
tcggtggttttccacaacatgaatcagttcctctccgaagggcatgtgcgcctgttcgcc
ggctggaatggctatcccgatggcgggcagagccgcgacttcatctcggtgcaggacgtg
gtggatgtcaatctgcactttctggagcatccgcagatttcgggcattttcaattgcggc
actggacgcgctcagccctttaacgacgtggctgccgccgtggtgaacagcctgcgtgcc
gagaacggcgagcaggcgctgccgctggaggagctggtgagcgagggactgatccgctat
atcccgtttccggatgaccttaagggacgctatcagagcttcactcaggccaacgtggat
aacctgcgtgcggctgggtttacggcgcccatgcgcgatgtgcagactggcgtgagcgag
tacgtgcgctattggcgtgcgcgcaaataa
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