Brassica napus (rape): 106351723
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Entry
106351723 CDS
T04128
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03020
RNA polymerase
bna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106351723
09124 Replication and repair
03420 Nucleotide excision repair
106351723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106351723
03400 DNA repair and recombination proteins [BR:
bna03400
]
106351723
Enzymes [BR:
bna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106351723
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106351723
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106351723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
106351723
NCBI-ProteinID:
XP_048601045
LinkDB
All DBs
Position
C1:1734093..1741326
Genome browser
AA seq
1839 aa
AA seq
DB search
MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVMHVEHSETTEKGKPKVGGLSDARLGTI
DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILAHEEEHK
FKQAMKIKNPKNRLKKILEACKNKTKCADDDNLEDVQSQDMDGPVKKIRGGCGAVQPKLT
IEGMKMIAEYKITRKKNDEQDQLPERAEMKKTLGADRVLSVLKRISDEDCQLLGFNPKYA
RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKSGAPAHII
SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDNGSHPPPGKTGAKYII
RDDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIRIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI
NLFRYSAWHSDQETGYISPGDTQVRIERGELLAGTLCKKTLGTGNGSLVHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISTAKTAVKDLIRQFQEKK
LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKSEFDRTFKYEIDDVNWNPAYLSDEHLEDLKGIRELRDVFDAEYQKLEADRY
QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDLHPVEIVDAVDKLQERLLVV
PGEDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFVQSLVSP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
TPEASRSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDYEFVRSYYEMPDED
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI
MNDEGAKGEGQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSKFDEEEGFK
TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIMEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD
CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFVGMTPARSPFSG
TPYHESMMMTPNYLLTPNVRSSPTSDAQFSPYVSGMAFSPSSSPGYSPASPGQSSASPGY
SPTSPYYSPTSPIYSPTSPNYRPTYSPTSPTYSPTSPIYRPTYSPTSPYYSPTSPTYSPT
SPYYSPSSPGSSPTSPSYSPTSPSYYSRTSRSYSPTSPAHKAYSPTSPAYSPTSPSYIAT
SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGSTSPSYNPQSAKYCPSLAYS
PSDARLSPASPGYSPTSPNYSPTSPSYSPTSPSYSPSSPTHCPSSPYSSGASPDYSPSAG
YSPTLPGYSSSSTGQYTPHEGYENDKTGEDASKDGKSSP
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atggatacacggttcccgttctctccggctgaggtctcaaaagtccgtgtggtccagttt
gggattctcagccccgatgagatcaggcaaatgtctgttatgcacgttgagcatagtgag
accaccgagaaaggtaaacccaaggttggaggattgagcgatgctcgtctcggtacgatt
gatcggaaggtgaagtgcgagacgtgtatggctaacatggctgagtgccctgggcatttc
gggcatcttgagctcgctaagcctatgtaccacgtcggttttatgaaaacggtgttgagt
atcatgcgttgcgtttgcttcaattgctccaagatcttagctcatgaggaggagcataag
tttaaacaggctatgaagataaagaaccccaagaatagacttaagaagattctggaagcg
tgcaaaaacaagactaaatgtgctgatgacgataatctcgaggacgttcaaagccaagac
atggacggacccgtgaagaagatccgtggtggatgtggtgcagtgcaaccgaagctgact
atcgagggcatgaagatgattgctgagtataaaataacgaggaagaagaacgacgagcag
gaccagcttccagagcgtgcagaaatgaaaaagacgcttggtgctgacagggttttgagt
gttttaaagaggattagcgatgaggattgtcaactcctagggttcaaccccaagtatgct
cgtcctgactggatgattctagaagtgcttcctatccctccaccccctgttagaccatct
gtaatgatggatgctacttccagaagtgaggatgacttgactcatcagcttgcaatgatt
atccgacacaacgaaaacttgaaaagacaggagaaaagtggagcaccagctcatattata
tcagagttcacacagctcttgcagtttcatatagcaacttattttgataacgagttgcct
ggacagccaagggctactcaaaaatcagggaggcccattaaatcaatatgtagtagactg
aaggcgaaggaaggcagaatcaggggaaatttgatgggaaaacgagttgatttctctgca
cgtactgttattacaccggatccaacgataaatatcgatgaacttggtgtaccgtggagt
atagccttgaatctcacataccctgaaacagttactccatataacattgaaagattaaag
gagctggtggataatgggtcacatcctccacctggcaagactggagctaaatatatcatt
agagatgatggccaaagactagaccttcgttaccttaagaagagcagtgatcatcatttg
gaacttggatacaaagtggagcggcacttaattgatggtgactttgttctgtttaatcgt
caaccaagtcttcacaagatgtctatcatgggtcacaggattaggatcatgccatactcc
actttccgactgaacttgtctgtcacttctccttacaatgctgattttgatggggacgag
atgaacatgcatgtaccacagtcattcgagactagagccgaggtgttggagctgatgatg
gttcccaaatgtatagtctccccccaggcgaatcggcctgtgatgggtattgtgcaagat
acacttctaggatgccgtaaaattacaaagagagataccttcattgagaaggatgtattc
atgaatacgcttatgtggtgggaagacttcgatgggaaagtcccagctcccgcaattttg
aagcctcgtcctctttggactggcaaacaagtctttaatcttatcataccaaagcagata
aatctattcaggtactctgcatggcattcagatcaagagacgggatacataagtccaggg
gatactcaagtgagaattgaaagaggggagcttctcgctggaactctctgcaaaaagacc
cttggtaccggtaacggaagtctcgtgcatgtcatttgggaagaagttggacctgatgca
gctagaaaattccttggccatactcaatggcttgtcaactactggctactgcagaatggt
ttcaccattggaattggtgacactattgctgattcgtcgacgatggagaaaattaacgag
actatatctactgccaaaactgctgtgaaagatcttatccgtcagttccaggaaaagaaa
ctggaccctgagccggggagaactatgacagagacgtttgagaacagagttaatcaggtc
ttgaataaagctcgtgacgatgctggaagcagtgctcaaaagagtttagcagaaaccaac
aacctcaaggccatggtgacagcaggatccaaaggaagtttcattaacatctctcagatg
actgcttgcgttggtcagcagaacgtggaagggaaacggatcccgtttggtttcgacggg
cggacgttgcctcatttcaccaaagatgattacggtccagagagccgtgggttcgtggag
aattcgtacctgcgtgggttgactccccaggagttctttttccacgcaatgggaggaagg
gaaggtcttatcgataccgctgtgaagacatcagagactggatacatccagaggcggttg
gtcaaggccatggaggatattatggttaaatatgacgggacggtgagaaactcgttgggc
gatgttattcagtttctctatggggaagatggtatggacgctgtgtggatcgagtcacag
aagctggactctttgaaaatgaagaagtctgagttcgacaggacgttcaagtacgagatt
gatgacgtcaactggaatccagcttacctaagcgacgaacatcttgaggacttgaaaggg
atccgggagctgcgtgacgtgtttgatgctgagtatcagaagcttgaggctgacagatac
caactcggcactgagattgctacaaacggtgatagcacttggccgttacctgttaacatc
aagaggcatatctggaatgcgcagaagactttcaagattgatttacgcaagatctcggat
ttgcacccggttgaaatcgttgatgcggttgataagttacaggagaggttgctggttgtt
cccggtgaagatgcactgagtgtagaagctcagaaaaacgccacgctgttctttaacatt
ttgcttcgcagcactctcgctagtaaaagagttttggaggagtacaagctcagccgcgag
gcttttgagtgggttattggtgagatagaatcgagatttgtgcagtcgcttgtatctccc
ggggagatgattggttgtgttgctgctcagtctattggagagcctgctacgcagatgact
ctgaacactttccattacgctggtgtcagtgcgaagaatgttaccctcggtgttccaagg
ctgcgagagattattaacgttgctaaacggatcaagacaccttctctatctgtctacctc
acaccggaagctagcagatcaaaagaaggggccaaaactgttcaatgtgctttggagtat
actactctcaggagtgtcactcaagctacggaggtctggtatgacccggatccgatgagt
actataatagaagaagattatgagtttgtgaggtcatactacgaaatgcctgatgaagat
gtttctccggataaaatatctccttggctgcttcgtatagagctgaaccgcgagatgatg
gtcgataagaagctgagtatggcggatattgctgagaagatcaaccttgagtttgatgat
gatctgacttgcattttcaatgacgacaatgctgagaaactgatccttcggattcgtatt
atgaacgatgagggagcaaagggagaagggcaagatgaatcagctgaggatgatgtgttc
cttaaaaagattgagagcaacatgctgacggagatggcgctgaggggtattccagacatc
aacaaggtgttcatcaaacaggttaggaaaagcaagtttgatgaggaggaagggttcaag
acgtctgaagagtggatgttagatacagaaggtgttaatctgttggctgtgatgtgccac
gaagatgtggatccaaagaggacaaccagcaatcacttgattgagattatggaagttctc
ggaatcgaggcggttcgccgtgctttgttggatgagcttcgagttgtgatatcctttgat
ggctcctatgtgaactaccgtcatcttgccatcttgtgtgatacgatgacctatcgtggt
catctgatggcgatcactcgacatgggatcaacagaaacgacactggccctctgatgagg
tgctcgtttgaagaaacggttgatattctactggatgctgcggcttatgctgagacggac
tgcttgcgtggcgtgaccgagaatataatgcttggccagcttgcaccaattggaacagga
gattgtgagctgtatctgaacgatgagatgctgaagaatgctattgaacttcagctccct
agctatatggatggcctggagtttgttggaatgactcctgctcgctcaccattttcaggc
actccttatcatgaaagcatgatgatgacaccaaactacctcttgactccaaatgtgcga
tcgtcgccaacgtcagacgcacagttctctccgtatgttagtggaatggccttttcacct
tcttcatctccaggttacagcccagcatccccaggacaaagttctgcttcccccggttat
agcccgacttctccctactacagtcccacttcccccatctacagtcccacttcccccaac
tacaggcccacctacagtcccacttcgcccacctacagccccacttcgccaatctacagg
cccacctacagtcccacttcgccctactacagtcccacctcgcccacatacagtcccact
tcgccctactacagtcccagttctcctggctctagcccaacaagtccttcctattctccc
acttcccctagctattatagtcggacatcccgaagttacagtccgacatcaccggctcac
aaagcttacagccctacttcccctgcatacagccccacctctccatcttacatcgctact
tcaccatcttacagcccaacttcgccttcttacagtcccacttcacccgcatacagccct
acatctcctggctacagcccaacttcaccaagctacagtccaacctcacctagttacggg
tctacgtctccaagctacaatcctcagtctgctaaatattgtccatctttggcttactct
cctagcgatgcaaggctatcaccagctagccctggctacagtcctacatcaccaaactac
agccctacatcaccatcgtactcgcccacttctccatcgtattcaccttcaagtccaaca
cactgtcccagcagcccatacagctcaggagcaagccctgactacagcccaagcgcaggc
tactcaccaacacttcctggctattcttcttcatccaccggtcagtatacaccacacgaa
ggctatgaaaatgacaagactggagaagatgccagcaaggatggtaaaagcagcccttga
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integrated database retrieval system
