Brassica napus (rape): 106354193
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Entry
106354193 CDS
T04128
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bna03016
]
106354193
Enzymes [BR:
bna01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
106354193
Transfer RNA biogenesis [BR:
bna03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
106354193
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
106354193
NCBI-ProteinID:
XP_013649527
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Position
A7:25126630..25129767
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AA seq
599 aa
AA seq
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MEDIEDMFAGGAGGAPPGFRLPLNAVGVNPKRNTSKRSISKQKDEVTDSNRDSLAPPSMK
IPGTQTIYIKTFGCSHNQSDSEYMAGQLTAFGYGLTEVPEEADLWLINTCTVKSPSQSAM
STLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRLL
NRKTLPALDLPKVRKNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVESLVERVRTVI
SEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLKE
IAAVLRHPCVYTFLHVPVQSGSDAVLTAMNREYTSGEFRTVVDTLTELVPGMQIATDIIC
GFPGETDEDFSQTVGLIKDYKFAQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTCVF
EAFAPYTGMEGKEERIWITEIATDGVHLVGHTKGYIQVLVSGPESMLGTSAIARITSVGR
WSVFGEVIETLASTNVVTQVREETKPACTSDVSTCETCACSAESCCGEGKSGEACNVSGD
ITRQDHKTGEKSMTKEEEKQEVVSHWGLVDKALVCGVFVSSLTILVLIISIASRVLLRQ
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggaggatatcgaggatatgttcgccggaggagctggcggtgcaccgccgggattccgg
ttaccgttaaatgccgtcggagttaatccgaagaggaatacgagcaaacgtagcatctcg
aagcagaaggatgaagttactgattcgaatcgcgattcgcttgctccgccatcgatgaag
atccctggaactcagacgatttacatcaagacgtttggttgttcacataatcagagtgat
agtgagtatatggctggacagcttactgcatttggctacgggttaacagaagtcccagag
gaggctgatctgtggctcattaacacctgtactgtgaagtctccgagccagtctgcgatg
tctactctgataacgaggggtagaagtgggaaaaaacctcttgtgatagccgggtgtgtt
cctcagggaagccgtgaccttaaagaactcgaaggcgttagtgtggttggagtgcaacag
attgatcgtgttgttgagattgttgaagagactcttaagggtcatgaagtgaggctgctg
aatcggaagactttgcctgcgcttgatctcccaaaggtgcggaagaacaattttatcgag
attctccccattaacgttggctgtttgggtgcatgtacttactgcaagaccaaacatgcc
cgtggtcacttaggaagctacacagtcgagagtctggtggagcgggtgagaactgtgata
tctgaaggagtcaaggagatttggttgagcagcgaggacactggagcatatggtcgtgac
ataggagttaatcttccaattctgcttaatgccattgttaaggagcttccttccgatcaa
agcacaatgctaaggattgggatgactaatcctccctttatcctcgagcatttgaaagaa
atagcagctgttttacgtcacccatgtgtctacacttttcttcatgtccctgtgcaatct
ggcagtgatgctgtgttgacggccatgaacagggaatatacatccggtgagttcaggacc
gtggtagacaccctaacagaacttgtgcctgggatgcaaattgctactgacataatatgc
ggattccctggggaaaccgatgaagacttttctcaaactgttgggcttatcaaggattat
aagtttgctcaagttcatatatctcagttttaccccagaccagggaccccagcagcaaag
atgaagaaggtacaaagtaagatagtaaagcaacgaagccgtgagctaacttgtgtcttt
gaggcttttgcaccttacaccggaatggagggcaaagaagagagaatatggataaccgaa
atagctaccgacggtgtccacttggttgggcacaccaaaggatacatacaggtcttagtt
agtggaccagaaagtatgcttgggacttcagcgatagcgaggataacatcagtagggaga
tggtcagtgttcggggaggtgattgagacactagcctctacaaatgtagtaacacaagtc
cgagaggagacaaagccggcatgtacctctgatgtcagtacttgtgagacttgcgcatgc
tctgctgagagctgttgtggagaagggaaatcaggagaggcctgtaacgtgtctggagat
atcacaagacaggatcacaaaacaggagaaaagtcaatgacaaaagaggaagagaagcaa
gaagtggtatcgcattggggtttggttgacaaggcacttgtgtgtggagtgttcgtaagc
tcgctcacaattcttgttttgattattagcatcgcatctagagttttgctgcgtcaatga
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