Brassica napus (rape): 106361293
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Entry
106361293 CDS
T04128
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03020
RNA polymerase
bna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106361293
09124 Replication and repair
03420 Nucleotide excision repair
106361293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106361293
03400 DNA repair and recombination proteins [BR:
bna03400
]
106361293
Enzymes [BR:
bna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106361293
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106361293
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106361293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
106361293
NCBI-ProteinID:
XP_013656472
LinkDB
All DBs
Position
C3:complement(61786922..61794411)
Genome browser
AA seq
1838 aa
AA seq
DB search
MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI
DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEDEHK
FKQAMKIKNPKNRLKKILDACKNKTKCEGGDDIDDVQTQDTDEPVKKSRGGCGATQPKIT
IEGMKMIAEFKVTKKKNDEIDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKYA
RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII
SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII
RDDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIRIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNTLMWWQDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQI
NLFRYSAWHSDAETGYITPGDTQVRIERGELLAGTLCKKTLGTGNGSLVHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSQTMEKINETISCAKTAVKDLIRQFQEKK
LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEXFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKAEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYQKLEADRF
QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV
PGEDGLSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI
MNDEGAKGEAQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSKFDEDEGFK
TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD
CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPMSGT
PYHESMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSP
TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSLAYS
PSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGY
SPTLPGYSPSSTGQYTPHEGDKNDKTGKDASKDDKSNP
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcggtttccgttctctccggccgaggtctccaaagtccgtgtggtccagttt
gggattctcagccccgatgagatcaggcaaatgtctgttatacacgtggagcatagtgag
accacggagaagggtaaacctaaggtgggagggttgagtgatactcggcttggaacgatt
gataggaaggtcaagtgtgagacgtgtatggctaacatggccgagtgtcctgggcatttt
gggcatcttgagctcgctaagcctatgtatcatgtgggtttcatgaagaccgtgttgagt
atcatgcgttgtgtttgcttcaactgctccaagatcctagctgatgaggatgagcataag
tttaagcaggccatgaagattaagaatcccaagaataggcttaagaagattctggatgct
tgcaaaaacaagaccaagtgtgaaggtggtgatgacattgatgatgttcaaacccaagac
acagacgagcctgtgaagaaaagccgtggtggatgtggtgcaacgcaacctaagatcact
attgagggaatgaagatgattgcagagtttaaggttacaaagaagaaaaacgatgaaata
gaccagcttccagagcctgcagaaaggaaacaaacacttggcgctgacagggttttgagt
gttttaaagaggattagtgatgaggattgtcagctcttagggtttaaccctaagtatgct
cggcctgactggatgattctagaagtccttcctattcctccaccccctgttagaccatct
gttatgatggatgccacttccaggagtgaggatgacttgactcatcagctagctatgatt
attcggcacaacgagaacttgaaaagacaggaaaagaacggagccccagctcacattatt
tcagagtttacacaactcctgcagttccatatagcaacctattttgataatgagctgcct
ggacagccaagagctactcaaaaatcagggaggcctattaaatcaatttgtagtaggctg
aaggcaaaggaaggcaggatcaggggaaatttgatgggaaaacgtgtggatttctcggca
cgtactgttattacaccagatccaacaataaatatcgatgaacttggtgtaccgtggagt
attgccctgaatctcacatacccagaaacagttactccatacaacattgagagattgaag
gagcttgttgattatggaccacatcctccacctgggaagactggggcgaaatatatcatt
cgggatgatggccagagactagatcttcggtaccttaagaagagcagtgatcatcatttg
gaacttggatacaaagtggagaggcacttaattgatggcgattttgttcttttcaatcgt
caaccaagtctgcacaaaatgtctatcatgggtcacaggattaggatcatgccatattcg
accttccgtctgaatttgtctgtcacctctccttacaatgctgatttcgatggggatgag
atgaacatgcacgtaccacagtcattcgagaccagagccgaggtgttggagctgatgatg
gttcctaaatgtattgtctctcctcaggcaaatcggcctgtgatgggtattgtgcaggat
acccttctaggatgccgtaaaatcacaaaaagagatacctttattgagaaggatgtattc
atgaatacgcttatgtggtggcaagacttcgatgggaaagttccagctcctacaattctg
aagccacgacctctttggactggcaaacaagtcttcaatcttatcataccaaagcagata
aatctgttcaggtactctgcttggcactcagatgcagagactggatacataactccaggg
gatacccaagtgagaattgaaagaggagaacttcttgccggaactctctgcaaaaagacc
cttggtaccggtaatgggagtctcgttcatgttatttgggaagaggttggtcctgatgca
gctaggaagttcctcggtcatactcaatggctggtcaactactggcttctgcaaaatggt
tttaccattggaatcggtgatactattgctgattcgcaaacaatggagaaaattaatgag
actatttcttgtgcaaaaaccgccgtgaaagaccttatccgtcagttccaggaaaagaaa
ttggatcctgaaccggggcgaactatgaccgagacgtttgagaacagagttaaccaggtt
ttgaataaagctcgtgacgatgctggaagtagtgctcaaaagagtttagcagaaaccaat
aacctgaaggccatggtgacagcaggatccaaaggaagtttcatcaatatttctcaaatg
acagcgtgtgttggtcagcaaaatgtggaagggaagcggatcccatttggatttgatggc
cggacgttaccgcatttcaccaaagatgactatgggcctgaaagtcgtgggtttgtcgag
aattcgtatctgcgtgggctgactcctcaagagntttttttccatgccatgggaggaagg
gaaggtcttattgatactgccgtgaagacatcagaaactggatacattcagaggcgattg
gtcaaggctatggaggatattatggttaagtatgatgggaccgtcagaaactcgttgggt
gatgtcattcagtttctctatggggaagatggtatggatgctgtgtggatagaatctcag
aagctggattccttgaaaatgaagaaagcagagtttgataggacgttcaagtacgagatt
gacgacgagaactggaatcctacatacctaagtgatgaacatcttgaggacttgaaaggg
atcagggagttgcgtgatgtatttgatgcagaatatcagaaactcgaggctgatagattt
caactcgggactgaaattgctacaaatggtgatagcacttggccattacctgtgaacatc
aagaggcatatctggaatgcacagaagactttcaagattgacttgcgcaagatttcggat
atgcaccctgttgagattgttgatgcagttgataaattacaggagaggctgttggttgtt
cctggtgaagatggattgagtgtagaagcacagaaaaatgccacactgttcttcaacatt
ttgcttcgaagcactcttgctagtaaaagggttttggaggaatacaagctcagccgtgag
gcttttgagtgggttattggtgagatagagtcaaggttcttacagtcgcttgtagctccc
ggggaaatgatcggttgtgttgctgctcagtcaattggagagcctgctacgcagatgact
ttgaatactttccattatgctggtgtcagtgcgaagaatgttacactcggtgttcccagg
ctgcgagagattattaacgtcgctaaaaggattaaaacaccttccctatctgtctacctt
acaccagaagctagcaaatcaaaagagggggctaaaactgttcagtgcgctttggagtat
actactctcaggagtgtcactcaagccacggaggtttggtatgacccggatccgatgagt
accattatcgaagaagattttgaatttgtgaggtcctactatgaaatgccagatgaagat
gtctctccagataaaatatctccttggctgcttcgtattgagttaaatcgtgaaatgatg
gttgacaagaagttgagtatggcagatatagcagagaagatcaacctggagtttgatgat
gacctgacctgcatatttaatgatgacaatgcggagaaactgatccttcggatccggatt
atgaatgacgagggagccaaaggagaagcgcaagatgaatcagctgaagatgatgttttc
cttaaaaagattgagagcaacatgctgacagaaatggcgctcaggggcattccagacatc
aacaaggtgttcattaagcaggttagaaaaagcaagtttgatgaggatgaaggattcaag
acatcggaggagtggatgttagatacagaaggcgttaatctgctggctgttatgtgccac
gaagatgtggatccaaagaggacaacaagcaatcacttgattgagattattgaagttctt
ggaattgaagcagttcgtcgtgctttgttggatgagcttcgagttgtgatatcctttgat
ggctcttatgtgaattaccgccatcttgccatattgtgtgatacaatgacctatcgaggt
catctgatggcgatcactcgacatggtatcaacagaaatgatactgggcctctgatgagg
tgctcatttgaagaaactgtcgatattctgctggatgctgcagcttatgctgagacagac
tgcttgcgtggtgttacggaaaatattatgctcggccagcttgcacctattggaacagga
gactgcgaactctatctgaatgatgagatgctgaagaatgcaattgaacttcagctccct
agctatatggatggactggagtttggaatgactcctgctcgctcgccaatgtcaggaact
ccttatcatgaaagcatgatgtccccaaactacctcctgagtccaaatatgcggttgtct
ccaatgtcagatgctcagttttctccatatgttggtggaatggcgttttctccttcttca
tctccaggctacagcccatcttctcctggttacagtcctacttctcctggttacagtccg
acttcacctggatacagtccgacttctcctggctatagtcccacttctcccacgtacagt
cctagttctcctggctatagcccaactagccctgcttattctccaacaagtccttcatat
tctcccacctcccctagctacagcccaacgtctcctagctacagcccaacgtctccaagc
tacagtccaacgtctccaagctacagcccaacatccccgagttacagtccaacttcacct
gcttacagtccaacttctcctgcatacagcccaacgtcacctgcatacagccctacctct
ccatcttacagtccaacttcaccatcttacagtccgacatcgccttcttacagccctact
tcaccctcctacagtccaacatctccttcttacagccctacttcacctgcatacagccct
acgtctcctggctacagccctacatctccaagctacagtccaacgtctcctagttacggt
ccgacatctccaagctacaaccctcagtctgctaaatacagtccatctctggcttactct
cctagcaatgcaagactatcaccagctagcccttacagtcctacatctccaaactacagc
cctacatcaccatcctactcacccacatctccatcgtattcaccttcaagtccaacatac
agtcccagcagcccatacagctcaggagcaagccctgactacagcccaagcgcaggttac
tcaccaacacttcctggttattcaccctcatccaccggtcagtatacaccacatgagggt
gataaaaatgacaagactggaaaagatgccagcaaggatgataaaagcaacccttga
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integrated database retrieval system
