Brassica napus (rape): 106376824
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Entry
106376824 CDS
T04128
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase-like
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bna03016
]
106376824
Enzymes [BR:
bna01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
106376824
Transfer RNA biogenesis [BR:
bna03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
106376824
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
FAM219A
Motif
Other DBs
NCBI-GeneID:
106376824
NCBI-ProteinID:
XP_013672408
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All DBs
Position
C6:43826679..43830070
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AA seq
601 aa
AA seq
DB search
MEDIEDMFAGGAGGAPPGFRLPFNAVGVNPKRNTSKRSISKQKDEVTDSNRDSLAPPSMK
IPGTQTIYIKTFGCSHNQSDSEYMAGQLTAFGYGLTEVPEDADLWLINTCTVKSPSQSAM
STLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRLL
NRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVESLVERVRTVI
SEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLKE
IAAVLRHPCVYTFLHVPVQSGSDAVLTAMNREYTSGEFRTVVDTLTELVPGMQIATDIIC
GFPGETDEDFSQTVGLIKDYKFAQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTCVF
EAFAPYTGMEGKEERIWITEIATDGVHLVGHTKGYIQVLVSGPESMLGTSAIARITSVGR
WSVFGEVIETLASTNVVTQVREETKPACTSDVSTCEACACSAENCCGEGKSGEACNISGD
ITGQDHKTGEKSMTKEEEKQEVVSHWGLVDKALVCGVFVSSLTILVLIISIASRVLLRQC
Q
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggaggatatcgaggatatgttcgccggaggagctggcggtgcaccgccggggttccga
ttaccgtttaatgccgttggagttaatccgaagaggaatacgagcaagcgcagcatctcg
aagcagaaggatgaagttactgattcgaatcgcgattcgcttgctccgccatcgatgaag
atcccaggaactcagacgatttacatcaagacgtttggttgttcacataatcagagtgat
agtgagtatatggctgggcagcttactgcatttggctacgggttaacagaagtcccagag
gatgctgatctgtggctcattaacacttgtactgtgaagtccccgagccagtctgcgatg
tctactctgataacgaggggtagaagtgggaaaaagcctcttgtgatagccggatgtgtt
cctcagggaagccgtgaccttaaagaactcgaaggcgttagtgtagttggagtccaacag
attgatcgtgttgttgagattgtcgaagaaactctcaaaggtcatgaagtgaggctgctg
aatcgcaagactttgcctgcgcttgatctcccaaaggtgaggaggaacaattttatcgag
attctccccattaacgttggctgtttgggtgcctgtacttactgtaagaccaagcatgcc
cgtggtcacttaggaagctacacagtcgagagccttgtggagcgggtgagaactgtaata
tctgaaggagtcaaggaaatttggttgagcagcgaggacactggagcatatggtcgtgac
ataggagttaatcttccaattctgcttaatgccattgtcaaggagcttccttccgatcaa
agcacaatgctaaggattgggatgactaatcctccctttatcctcgagcatttgaaagaa
atagcagctgttctacgtcacccatgcgtctacacttttcttcatgtccctgtgcaatct
ggcagtgatgctgtgctgacggccatgaacagggaatatacatcgggtgagttcaggacc
gtggtagacaccttaacagaacttgtgccggggatgcaaattgctactgacataatatgc
ggattccctggggaaaccgatgaagacttttctcaaactgttgggcttatcaaggattat
aagtttgctcaagttcatatatctcagttttaccccagaccagggaccccagcggcaaag
atgaagaaggtacaaagtaagatagtaaagcaacgaagccgtgagctaacttgtgtcttt
gaggcttttgcaccttacaccggaatggagggcaaagaagagagaatatggataaccgaa
atagctaccgacggtgtccacttggttgggcacaccaaaggatacattcaggtcttagtt
agtggaccagaaagtatgcttgggacttcagcgatagcgaggataacatcagtagggaga
tggtcagtgttcggggaggtgattgagacactagcctctacaaatgtagtaacacaagtc
cgagaggagacaaagccggcatgtacctctgatgtcagtacttgtgaggcttgcgcatgc
tctgctgagaactgttgtggagaagggaaatcaggagaggcctgtaacatttctggagat
atcacaggacaggatcacaaaacaggagaaaagtcaatgacaaaagaggaagagaagcaa
gaagtggtatcgcattggggtttggttgacaaggcacttgtgtgtggagtgttcgtaagc
tcgctcacaattcttgttttgattattagcatcgcatctagagttttgctgcgtcaatgt
caatga
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