Brassica napus (rape): 106377177
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Entry
106377177 CDS
T04128
Name
(RefSeq) lycopene beta cyclase, chloroplastic
KO
K06443
lycopene beta-cyclase [EC:
5.5.1.19
]
Organism
bna
Brassica napus (rape)
Pathway
bna00906
Carotenoid biosynthesis
bna01100
Metabolic pathways
bna01110
Biosynthesis of secondary metabolites
Module
bna_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
106377177
Enzymes [BR:
bna01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.19 lycopene beta-cyclase
106377177
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Motif
Pfam:
Lycopene_cycl
DAO
Pyr_redox_2
FAD_oxidored
NAD_binding_9
Thi4
Trp_halogenase
Pyr_redox_3
GIDA
FAD_binding_3
NAD_binding_8
HI0933_like
Pyr_redox
FAD_binding_2
Motif
Other DBs
NCBI-GeneID:
106377177
NCBI-ProteinID:
XP_048615253
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Position
C5:52397051..52398958
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AA seq
493 aa
AA seq
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MDTLLRTPNKLEFFIPQFHGFERLSPNPSRVKLGLKKRAIRIGSSITSASSALLDLVPET
KKENLDLDLPLYDTSLNKTVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNY
GVWVDEFEAMDLLDCLDTTWSGAVVYINDGAEKDLSRPYGRVNRKQLKSKMLQKCITNGV
RFHQAKVTDVVHEEVNSTVVCSDGVKIQASVVLDATGFSRCLVQYDKPYNPGYQVAYGIV
AEVDGHPFDVDKMVFMDWRDKHLDAYPEVKERNSKIPTFLYAMPFSSNRIFLEETSLVAR
PGLKMEDIQERMVARLKHLGINVKRIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPS
TGYMVARTLAAAPIVANAIVRYLGSTKGDQLSAEVWRDLWPIERRRQREFFCFGMDILLK
LDLDATRRFFDAFFDLEPRYWHGFLSSRLFLPDLVFFGLSLFSHASNTSRLEIMTKGTVP
LAKMINNLVKDRD
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggatactctcttgagaacacccaacaagctcgagtttttcatccctcagtttcatggg
ttcgagagattaagtccaaatccttcaagggttaagcttggtttgaagaaaagagcaatc
agaatcggtagtagtatcactagtgctagtagtgctcttttggatcttgttcctgaaacc
aagaaggagaatctcgacttggaccttcctttatacgacacttccctgaacaaaactgtt
gatctagctatcgtcggcggcggccctgctggtttagccgtggctcaacaagtctcagaa
gctggactctctgtatgctccatcgacccttcccccaaactcatttggcctaacaactat
ggagtttgggttgacgagttcgaagccatggacttgctagactgcctagacaccacctgg
tccggcgccgtcgtctacatcaacgacggcgccgagaaggacctatcccggccttacggg
agagtcaaccgtaaacagctcaaatccaagatgcttcagaagtgcatcaccaacggtgtt
aggttccatcaggctaaggtgaccgacgtggttcacgaggaggtgaactccactgttgtc
tgcagtgacggtgtgaagattcaggcttctgttgttctcgacgctactggtttttcaaga
tgcttggtgcagtacgacaagccgtataacccgggttatcaagtagcttatggtatcgtt
gctgaggtcgatggccacccgtttgatgtggataagatggtgtttatggactggagagat
aagcatcttgacgcgtaccctgaggttaaagaacggaacagcaagatccctacgttcttg
tacgcgatgccgttttcttcaaacagaatctttcttgaggagacgtctcttgtggctagg
ccgggtttgaagatggaagatatccaagagaggatggttgcgaggctgaaacatttgggg
atcaatgtgaagcgtattgaggaagacgagcgttgtgtgatccctatgggaggtccttta
cctgtcttgcctcaaagagttgttggcattggcggtacggcggggatggttcatccttcc
accggttacatggtggctaggactcttgcggctgctccgatagttgcaaacgccatagtg
aggtaccttggttctactaaaggagatcagctctcagctgaggtgtggagagacttgtgg
cctattgagaggaggagacagagggagttcttctgttttgggatggatattttgctgaag
cttgatttggatgctactaggaggttctttgatgcgttctttgacctggaaccgcgttac
tggcatggtttcttgtcgtcgaggctgtttctcccggacttggtgttctttgggttgtcg
ctcttctcgcatgcttctaatacctcgaggttggagatcatgactaagggaactgttcct
cttgctaagatgatcaacaatttggttaaagatagagactaa
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