KEGG   Brassica napus (rape): 106411678
Entry
106411678         CDS       T04128                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
bna  Brassica napus (rape)
Pathway
bna03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106411678
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bna03021]
    106411678
Enzymes [BR:bna01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     106411678
Transcription machinery [BR:bna03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     106411678
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 106411678
NCBI-ProteinID: XP_048595654
LinkDB
Position
A9:complement(7679294..7686937)
AA seq 1460 aa
MEEKCEELQVPMGTLKSISFSISNNKDRKNMSVMEVEAANQVTDSRLGLPNRDDICKSCG
SKDRKVCEGHFGVINLRYPVINPHLLKEVATLLNKFCPGCKYTKKKQSQSQNPEDRPDRC
RYCISNTDYPLMKFRVTTKEAFRRSGIVCEVSEDNVLKLSKRGLSALPPDYWDFMPKDPN
IDESCLKPSRRILTHAQVYALLSGIDERVIRKEIPMFDSLPLASFPVTPNGHRVSEMVTQ
FTGPRLVFDERTRIYKKLVAFEGNGLELSSRVMECMQYSRLFSENVSPSQESANPYQKKS
DTPELRGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPRSIAERLQVSENLNDWNR
ERLVTSCFHKLLEKGETHVRRGGRLVGIRAIDDLQTGDSFLRTLKDGDTVLMNRPPSIHQ
HSLIAMSVKVLPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKAELEELVALDKQL
VNRQNGRNLLSLGQDSLTAAYLVNVETNCFLNRAQVQQLQMYCPYDLPRPAIIRASSTRS
EPQWTGKQLFGMLFPPGFEYAYPLNNVVVTNGELLSSSDGSGWLRDGEGNFIQGLMKHDK
EKVLDIIYSAQEMLSQWLLNRGLSVSLSDLYFASDTHSRRNLTEEISYGLQEAEQVCNKQ
QLMVESRRDLLAVNGEEDMVVADDLELFCYERQRSATLSKLAVSAFKDAYRDVQALAYRY
GDQSNAFLVMSKAGSKGNMGKLAQHSMCIGLQNSSVALSFGFPRKLTCASWNDPNSPLRG
ARGEDRTGHESFVPFGVVESSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSRKLMFF
MRDIYAAYDGTVRNSFGNHLVQFRYESSDDAEEDMTGEAVGSLSACALTEAAYSALDQPI
SLLETSPLLNLKNVLECGSKKGLKEQTMSLCLSETLSKKKHGFEYGALDIKSHLEKLCFS
EIVSTSMIIFSPRTNTRMPMSSWVCHFHISKKVLKQNQLDLESVVSSLNKQYANRKKELK
LDVIDLDIQSTNHCSWDDKAMEEDRVCITVTVLEASRNDSLELDAIRLVLIPFLLESPVK
GYREIKKVDILWVDRPKAPQRNKKGFAGELFLKVTMHGVRGQKSFWSALLETCLPIMDMI
DWTRSHPDNIRQCCSVYGIDAGRSIFLADLESAVSDTGKAMLREHLLLVADSLSVTGEFV
ALNPKGWSRQRQAESAPAPFAQACFSSPSQCFFKAAKEGVTDELEGSIDALAWGKVPSFG
TGDQFEIIISPKNHGFSTPVVDVYGFLSRTATLPKRKAARATSSSLPKSDEFTVQPFPLL
NSALSKAVKTLDGKGLTRSQLRMIFTWDDMEKLSRSLKRILYNYEIDATLNELDGRLLMM
ALLFHPNRDEKIGPGFKGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK
RVNFYKAKYLRNGTVQPGAI
NT seq 4383 nt   +upstreamnt  +downstreamnt
atggaggaaaaatgcgaggagcttcaggtgcccatggggactctaaagtcaataagcttt
agcatttcgaataacaaagaccgaaaaaacatgtctgtcatggaggttgaagcagcgaat
caagtgactgattcccggttagggctccccaatcgggatgatatttgcaaatcatgtggc
agcaaagatagaaaagtttgtgaagggcattttggggttataaacctcaggtacccggtg
attaacccgcatttacttaaggaggtagctacattgttgaacaagttctgccctggatgt
aaatacacgaagaaaaaacagtctcagtctcagaatcctgaagaccggcctgacagatgt
agatattgcatttcaaatacagattaccctctaatgaagttcagggtaacaacaaaagaa
gcctttaggcgatctggaatcgtttgtgaagtgagtgaagacaatgtgttgaagctcagt
aaacggggactatcagcattacctccagattattgggattttatgcctaaagacccaaat
atcgacgaaagctgtttgaaaccaagcaggcggattctaactcacgcacaggtttatgca
ctgttgagtgggattgatgagagggtgatcaggaaggagatccccatgttcgactctctt
cctctggcatcttttccagttacaccaaacggtcatcgtgtatccgagatggtcactcag
ttcaccggtcctcgactagttttcgatgaacggactcgtatctacaagaaactagttgcc
ttcgaaggaaatggtcttgagttgagttcacgtgtgatggaatgcatgcaatactcaaga
ctcttttcggaaaacgtgtctcctagtcaagaatccgcgaacccgtaccaaaagaagtca
gatactcccgagctacgcggtctaaggttcatgaaagatgtgcttctcggcaaaagaagc
gaccacacgttccgcacagtggttgtcggcgacccttctctcaagctcaacgagatcggc
atacctcggagtatcgcagagaggcttcaagtatccgagaatctcaacgactggaacaga
gaacgcctcgtcacctcctgtttccacaagctcctcgagaaaggagagactcacgtgagg
agaggaggtcgcttagtagggatccgagccatcgacgatctccaaacgggagacagcttc
ttacgcacgttaaaggatggagacacggtgctgatgaacagacctccttccattcatcag
cactcgctcatcgcaatgtctgttaaagtcctccccactacctccgtggtttcgttaaac
cccatctgttgcttaccctttcgtggtgacttcgatggagactgtcttcacgggtacgtt
cctcagtctatccaagccaaggctgagctcgaggagcttgtggctttggataagcagctt
gttaacagacagaacggtcgtaacttgctgtcgttaggacaggacagcttgacggctgcg
tatctggttaacgtcgagacgaactgtttcctgaaccgagctcaggttcagcagctgcaa
atgtattgtccctatgatcttcctcggcctgcgatcatccgagcttcgtctacgagaagt
gagccgcaatggacggggaagcagctgtttgggatgctcttccctcccgggttcgagtac
gcttaccctctgaataatgtagttgtaaccaacggagagcttttgtcttcttccgatggg
tctggttggttgcgtgatggagaaggaaacttcatccagggtttgatgaagcacgataaa
gagaaagttcttgatataatctactcggctcaagagatgctctctcagtggttactgaat
cgaggactgagtgtttctctatctgatttatacttcgcatctgatacacactctcggaga
aacttgacggaggagattagttacggtttgcaagaagctgagcaagtctgcaacaagcag
cagctcatggtggagtcccgcagagacctcctcgcggttaacggagaagaagatatggtc
gtcgctgatgatttggagctgttctgctacgagagacagagatcagctaccttgagcaag
ctcgcggttagtgccttcaaggatgcgtatagagacgtccaggctctggcgtatagatac
ggagaccagtcgaacgcgtttctcgtcatgtccaaagctggtagcaaagggaacatgggg
aagctcgctcagcacagtatgtgcattggtcttcagaactcatcagttgcgttgtccttt
gggttcccacgtaagctgacttgcgcctcgtggaacgacccaaacagcccgcttcgaggc
gcaaggggagaagaccgaacgggtcatgagtcttttgttccctttggtgtcgttgagagc
tcgtttctgacgggtctgaatcctttggagtcttttgttcattctgtgacgagccgagac
agctcctttagcggtaatgctgatcttcccgggacgcttagcaggaagctgatgttcttt
atgagggatatatacgctgcttacgacgggacggtgaggaactcgtttggtaaccatttg
gttcagtttcgttatgagagtagtgatgatgcagaagaggacatgaccggtgaagcagtt
ggatcgctttctgcttgtgctctcactgaggctgcttacagcgctcttgatcagcccatt
agccttcttgagacttcgcctcttctgaatcttaagaatgtgttggagtgtgggtcgaag
aaaggtctaaaggaacagacaatgtctttgtgcttgtctgaaacactttctaagaagaag
cacgggttcgaatacggggcactggacatcaagagccacttggagaaactgtgtttctca
gagattgtttcaacgtccatgataatattctctccgaggactaacacaaggatgcctatg
agctcgtgggtttgccattttcatatctccaagaaagtactgaaacagaaccaactggac
ctcgaatctgttgtctcttcgttgaacaagcagtatgcgaacaggaagaaagaactgaag
cttgatgtaatagatttagatatacaaagcacaaaccactgctcttgggatgataaggca
atggaagaagatagagtctgcatcacagttactgttctcgaagcctccaggaacgattct
ttggagcttgatgctattcgccttgtcttgatcccttttcttctcgaatctcctgtcaaa
ggctaccgagagattaaaaaggtggatatcttatgggttgacagaccaaaagctccccag
aggaacaagaaaggctttgcgggtgagcttttcttgaaggttacaatgcatggagttcgt
ggccaaaagagcttctggagcgctcttctcgaaacatgtcttcccattatggatatgatc
gattggacaagaagccatcctgataatatccgacagtgctgctcggtttatggaatagac
gctggacgtagcatcttcctagcggatttggagtctgctgtgtcggatacgggcaaggcg
atgctgcgggaacatctgcttcttgtagctgattccctctcagtcaccggagagtttgtg
gcactaaaccccaaaggttggagtagacaaagacaggccgagtcagctcctgctcctttc
gctcaagcgtgcttctcgagcccaagtcagtgctttttcaaagcagctaaggaaggtgtc
acagacgagcttgaaggatctatcgacgcattggcttggggcaaagttccttcttttggg
actggagatcagttcgagatcatcatctcccctaagaatcatgggtttagtacaccggtg
gtagacgtgtacggctttctcagtaggacggccacgcttccaaagagaaaggctgctcgt
gcaacaagctcctccttgcccaaatcagacgagttcacggtccagccattccccttgctc
aactcggctctctcgaaagcagtcaagacactcgatgggaaaggactcaccaggtcgcag
ctcagaatgatctttacgtgggacgacatggaaaagctttctcggtcgctgaaacgcatt
ctctacaattacgagattgatgctacgttgaatgagttggacgggagacttctgatgatg
gctcttctcttccatcccaacagagatgagaagataggacctggcttcaaaggaatcaag
gtggctaattctaagcacgggaatgctcgttgctttgaggtggtgagaacagacggaaca
actgaagatttctcttaccacaagtgtgtgttgggagcaacagagatcattgcccctaag
agggttaacttctacaaggcgaagtaccttagaaacggtacggtgcagcccggtgctatc
tga

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