Brassica napus (rape): 106412011
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Entry
106412011 CDS
T04128
Name
(RefSeq) pseudouridine-5'-phosphate glycosidase 2 isoform X1
KO
K16329
pseudouridylate synthase [EC:
4.2.1.70
]
Organism
bna
Brassica napus (rape)
Pathway
bna00240
Pyrimidine metabolism
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
106412011
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.70 pseudouridylate synthase
106412011
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Gene cluster
GFIT
Motif
Pfam:
Indigoidine_A
DUF6750
Glyco_hydro_127
Motif
Other DBs
NCBI-GeneID:
106412011
NCBI-ProteinID:
XP_013708350
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Position
C5:complement(27251974..27254600)
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AA seq
333 aa
AA seq
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MASSSSSAALYRISNLQNHISPLEANNKLRSLVKISPQVSEAISSGRAVVALESTIISHG
MPYPQNLQTAKEVESIVRENGAVPATIAILNGVPCIGLNEDELERLASLGKGVQKTAGRD
IAYVVATRGNGATTVSATLFFASMVGIQVFVTGGIGGVHRHANQTMDISSDLTALGRTPI
AVISAGVKSILDIPKTLEYLETQEVYVAAYKSDEFPAFFTEKSGCKAPSRVDSPEDCARV
IDANKKLNRQAGILFAVPIPKQHSAAGNLIESATQRALTEAREQNVTGNAETPFLLARVN
ELTGGTSLAANIALVKNNALIGSQIAVALSQLT
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcttcttcttcggctgctctttatagaatctcaaatctccagaatcatatc
tcccctcttgaagccaacaacaagctaaggagtctggtgaagatatctccacaagtatct
gaagccatatccagtggacgtgctgtggtcgctcttgagtcaaccattatctcccatggg
atgccttaccctcaaaacctgcaaacagcaaaagaggtggagtctattgtgagagagaat
ggagcagttcctgccacaatagctatcttgaacggagttccttgcataggtctgaacgaa
gacgagcttgaacgtcttgcatctctggggaaaggtgtccaaaagactgcaggcagggac
atagcatatgttgtggctacaagaggaaatggtgctactacagtctctgcaaccttgttt
ttcgcttctatggttggcatccaagtctttgtaaccggtggaattgggggtgtacatagg
catgccaaccaaactatggacatatcatctgatcttactgcacttggaaggactcctata
gctgtgatatcagcaggcgttaaatccatacttgatattccaaagactcttgaatatttg
gaaactcaagaagtgtatgttgctgcatacaagagcgatgagtttccggcatttttcaca
gaaaaaagcggctgtaaggcaccttctcgtgtagatagccctgaagactgtgctcgagta
atagatgcaaacaagaagctaaaccgtcaggcagggattctgtttgctgttccaatcccg
aaacagcattcagccgctggaaatcttatagaatcagcaacacagcgtgctcttacagaa
gcaagggaacaaaacgttacgggaaatgcagaaactccgttcttgcttgcacgggtaaat
gagttaactggaggcacttcacttgcagcaaacattgcgcttgtgaaaaacaatgcactt
atcggttctcagattgcggtagccctttctcagctaacgtga
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