Brassica napus (rape): 106452813
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Entry
106452813 CDS
T04128
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106452813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106452813
Enzymes [BR:
bna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
106452813
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106452813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
ATP_bind_1
AAA_22
ABC_tran
AAA_24
GTP_EFTU
AAA_29
FtsK_SpoIIIE
MMR_HSR1
RecA
SRPRB
T2SSE
Motif
Other DBs
NCBI-GeneID:
106452813
NCBI-ProteinID:
XP_013750443
LinkDB
All DBs
Position
C3:complement(23638498..23641181)
Genome browser
AA seq
446 aa
AA seq
DB search
MAYGGPSMNPPAMSGAIPGGSSSNLKQVKLDRESELRIEVSDEPLRLRVVNGTAEIFGAE
LPPEIWRTFPPRLKFAVFTWYGATIEMDGVTETDYTADETPMVSYVNVHAILDARRRFAK
AFTSTDSEPPQGPRVIVVGPTDSGKSTLTKMLISWAAKQGWKPTFVDLDVGQGSITIPGS
IAATPIEMPLDPVEGFPLDMALVYYYGHTTPANNVELYKTMVKELAQVLERQFLGNPESR
AAGMVINTMGWIDGIGYELLLHAIETFNASVVLVLGQEKLFSMLKDVLKSKSNVDVVKLH
KSGGVVARNRDYRKVARSSRIQEYFYGLTKELSPYANTSSFSDVQVFRIGGGPQAPRSAL
PIGSDPVSNPLRVTPVNIEERDLLHSILAVSYAEEPDQIVSSNVSGFVYVTEVDVLRKKI
TYLAPSPGALPSKILVAGSLTWLESH
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggtggcccgtcgatgaacccaccggctatgagtggtgccattcctggaggt
tcttctagtaatctgaagcaggtgaagctggacagagaaagcgagctaagaatcgaagtc
tccgacgagcctctcagactccgtgtcgttaacgggacggctgagatattcggcgctgag
cttcctcctgagatctggcgcaccttccctcctcgcctcaaatttgcggttttcacttgg
tatggagccaccattgagatggatggtgtcacagaaacagactatacagcagatgagaca
ccaatggtcagctacgttaatgtacacgccatactcgatgcaaggagacgttttgctaaa
gctttcacatctactgactcagaacctcctcagggacctagggtcattgtagtagggcct
acggattcagggaagagcacattgactaagatgcttattagttgggcagccaaacaggga
tggaagcctacgtttgtagaccttgatgttggccaaggctccattacaatacctggttct
attgctgctacacctatagagatgccgcttgatcctgttgaagggtttcctctagatatg
gctctcgtctactactacggtcacactacaccagctaacaacgttgaactgtacaaaact
atggtgaaggagcttgcacaagtgctggagagacagtttctagggaaccctgagtctcga
gctgctggaatggtgatcaacacaatgggatggatcgatggtatcggttatgagctgctt
ctccacgcaatagaaacattcaacgcctcggtggtacttgtcttgggtcaagaaaagctc
ttcagcatgcttaaagacgtgctgaagagtaagagtaatgttgacgtggtgaagcttcac
aagtcaggtggagttgtggctaggaaccgtgactaccgtaaagtagcgagaagctctagg
attcaggagtatttctacggactaacgaaagaactctctccttatgccaatacatctagc
ttcagtgatgtgcaagtgttccgcattggtggtggaccgcaagctccaaggtcggctctt
ccaatagggtctgatcctgtttctaatccgttgagggtgacgcctgtaaatattgaagag
agggatctgctgcattctatcctcgctgtctcatatgcagaagaaccggaccagattgtc
tctagcaatgtttcagggtttgtgtatgtgactgaggttgatgtgctgaggaagaagata
acgtatttagcaccatcgccaggggcattgcctagcaagatcttggtcgctggatctttg
acatggcttgagagtcattag
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