Bactrocera oleae (olive fruit fly): 106626103
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Entry
106626103 CDS
T07646
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bod
Bactrocera oleae (olive fruit fly)
Pathway
bod03020
RNA polymerase
bod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bod00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106626103
09124 Replication and repair
03420 Nucleotide excision repair
106626103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bod03021
]
106626103
03400 DNA repair and recombination proteins [BR:
bod03400
]
106626103
Enzymes [BR:
bod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106626103
Transcription machinery [BR:
bod03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106626103
DNA repair and recombination proteins [BR:
bod03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106626103
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3137
Motif
Other DBs
NCBI-GeneID:
106626103
NCBI-ProteinID:
XP_036232241
LinkDB
All DBs
Position
Unknown
AA seq
1889 aa
AA seq
DB search
MATNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVI
DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPQNPK
IKEIVMKSKGQPRKRLAYVYDLCKGKTVCEGGEDMDMAKDGQQTDPNKKQGHGGCGHYQP
SLRRSGLELTAEWKHVNEDSQEKKIIVTAERVWEILKHITDEECFILGMDPKYARPDWMI
VTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELKKNEGTGAAAHVIQENIKM
LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL
RFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFITREQMMNLLMFLPTWDGKVPQPCILKPRPLWTGKQLFSLIIPGNVNMIRTHSTH
PDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFY
GNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTV
KLSNKAFEKRFKFDWSNERYMRKVFTDDVIKELSESGNALPELEIEWDQLCRDREALREI
FPNGDSKVVLPCNLQRMIWNVQKIFHINKRMPTDLSPLRVINGVRDLLQRCVIVVGNDHL
SKQANENATLLFQCLVRSTLCTKYVAEEFRLSAEAFEWLIGEIETRFQQAQANPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNEETKF
QDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFK
AIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCRYGIEIPSTLGSSMIGGSAMFFGAGATPS
MTPPMTPWVQCGTPRYFSPSGQMSGMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSSP
GPSMSPYLPPSPSVSPSYSPTSPNYTASSPGAASPNYSPTSPNYSPTSPLYPATSPRYST
TPNFAPQSTGYSPSTSGYSPTSPVYSPTSNYQSSSPSFSGSGTNMYSPGSAYSPTSSNYS
PNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPSSPNYTPVTPSYSPTSPNYSASPH
YSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYS
PSSPQHSPANQYSPTGSSYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPM
YSPTAPSQGYSPTSPAYSPSSPTFEESDD
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaacgattcaaaggcgccattgcgccaagtgaaacgtgtgcaattcggtatt
ttatcacctgatgaaattcgtcgcatgtccgttacagaaggaggcgtacagtttgccgag
accatggaaggtggtcgaccaaagttgggcggtctaatggatccacgtcaaggtgtaata
gacagaacatctcgatgccaaacctgtgctggtaatatgacagaatgtccgggacatttt
ggccatatcgatttagcaaaaccagtttttcatattggttttattacaaagacgattaag
atattgcgttgtgtgtgcttttactgctcgaaaatgttagtatctccacaaaatccaaaa
attaaagagattgttatgaaatcaaagggacagccacgaaagcgtctggcatatgtatat
gatttgtgtaaaggtaagactgtgtgcgagggtggtgaggatatggatatggcaaaagat
ggacaacaaacggatcctaataaaaaacaaggtcacggtggttgcggtcattatcaacca
tcattgagacgcagtggattagagttgaccgccgagtggaagcatgtaaatgaagattca
caggaaaagaaaatcatagtgacggcggagcgtgtttgggaaattttaaaacatattact
gatgaagaatgtttcatacttggtatggatcccaaatatgcacgacccgattggatgatt
gtcacggtattgcctgtaccaccattagctgtgcgtccagctgttgttatgtttggcgct
gctaagaatcaggacgatttaacgcataagcttgcggatattattaaagcaaacaatgaa
ttgaaaaagaacgaaggcacaggcgctgcagcgcatgtcatacaagagaatataaaaatg
ttgcaattccacgttgccacgctagttgataatgacatgcccggtatgccacgcgctatg
caaaaatctggcaaaccactcaaagccataaaagcacgtttgaagggcaaagaagggcgt
attcgtggtaatttgatgggtaagcgtgtcgatttctcggcacgtactgtcatcacaccc
gatccaaatctgcgtattgatcaagtcggtgtaccacgttccattgcgcaaaatttaaca
tttccagagctagtcactccctttaatattgatcgtatgcaggaattggtgcgacgtggt
aattcacaatatcctggcgccaagtatattgtacgtgacaatggtgagcgtatagatttg
cgttttcacccaaaaccatcagatttgcatttgcaatgtggttacaaagtagaaagacat
ttacgcgatgacgatctggttattttcaatcgtcagcccacgctacataaaatgagtatg
atgggacatcgtgtcaaggtattgccttggtctacattccgtatgaacttgtcgtgtact
tcaccctacaacgctgatttcgatggcgatgaaatgaacttgcacgtgccgcaatcgatg
gaaacccgtgctgaggtggagaatatacacgttacaccacgtcaaattatcacaccacag
gctaacaaacccgttatgggtattgtgcaggatactctaacagctgtacgtaaaatgaca
aaacgtgatgtattcattacgcgtgagcaaatgatgaatttgcttatgttcttacccaca
tgggatggcaaagtaccacagccatgtattttaaaacctcgtcctctgtggacgggcaaa
caattattttcactgattatacctggcaatgtaaacatgatacgcacacattctacacat
ccagatgatgaagatgatggtccctacaagtggatctcacccggtgacactaaagtcatg
gtcgaacatggtgaattaattatgggtatcttgtgtaaaaagacattgggtacatcggcg
ggttcactgctgcatatttgtttcttggaattgggtcacgaaattgccggtcgtttctac
ggtaacattcagactgtaattaataattggctattgcttgagggtcacagcatcggtatt
ggtgacacaattgccgatcctcagacctataacgaaattcaaatggccatcaagaaagcc
aaggacgatgtcataaacgttattcaaaaagcacacaacatggagttggagcccacaccc
ggtaatactttgcgtcagactttcgagaatcaggtgaatcgtattttgaacgatgctcgt
gacaaaactggtggttctgctaagaaatctttgactgaatacaacaacttaaaggctatg
gtggtgtcgggttcgaagggttccaacattaatatctcacaggttattgcttgtgtgggc
caacagaacgttgagggtaaacgtataccatacggtttccgtaagcgcacattgccacat
ttcattaaagacgattacggtcctgagtcgcgtggcttcgtggagaattcgtatcttgcc
ggcttaacaccttccgagttctacttccacgctatgggtggtcgtgaaggtcttatcgat
actgctgtcaagactgcagaaactggttacattcaacgtcgtctcataaaggctatggag
tcggttatggtaaactacgacggtacagtgcgtaattcagtgggtcagctgattcagtta
cgttacggcgaggacggtttggctggtgaaacggtagaatttcaaaatttaccaactgtc
aaattgtcaaataaagcatttgaaaagagattcaaattcgattggtccaacgaacgttat
atgcgtaaagttttcaccgacgatgtaatcaaagagctgagcgagagtggcaatgcgctg
cccgagttggaaatcgaatgggatcaattgtgccgggatcgtgaagcgttacgtgagatt
ttccccaatggcgattctaaggttgtattgccttgcaatttgcagcgcatgatttggaat
gtgcaaaagattttccatattaataagcgcatgcccacagatttgtcgccgctgcgcgta
attaatggcgtacgcgatttgttgcagcgctgtgtcattgtggtgggcaacgatcacctt
tcgaagcaggccaatgagaatgccacactgctgttccagtgtttggtgcgctccacgctt
tgcacgaaatatgtagcggaggagtttcgtctctcagccgaagcgttcgaatggttgatt
ggtgagattgaaacgcgtttccagcaggcacaagccaaccccggcgaaatggtgggcgct
ttggcagcgcagagtttgggtgaacccgccacacagatgacactgaacactttccatttt
gctggtgtgtcgtcgaagaacgtaacattgggtgtgccgcgtttaaaggaaattattaac
atctccaaaaaaccaaaagcgccctcactaactgttttccttactggcggtgcggcgcgt
gatgccgagaaagctaagaatgtgctgtgtcgtttggaacacaccaccttacgtaaggtg
accgccaacactgctatttactacgatcccgatccgcagcgaactgtcatctcggaggat
caagaattcgtgaatgtctactatgagatgcccgatttcgatccgacgcgcatttcacct
tggttgctgcgtatcgaattggatcgcaaacgtatgaccgataagaaattgactatggaa
cagattgctgagaagatcaacgctggtttcggtgacgatttgaattgtattttcaatgat
gacaacgctgacaaattggtgctacgcatacgtatcatgaacaatgaggaaaccaagttc
caagatgaagatgaagccgttgataaaatggaggatgatatgttcttgcgttgtattgaa
gcgaatatgctctcggacatgacactgcagggcatcgaagccattggcaaggtgtacatg
catttaccgcaaacggacagtaagaagcgtattgtcatcaccgagacgggtgaatttaag
gccattggtgagtggcttttggaaactgacggtacttcaatgatgaaagtactctctgaa
cgtgatgtggatccggtgcgtacatcgtcgaatgatatttgtgaaattttccaagtattg
ggcatagaggctgtgcgtaaatcggtggagaaggaaatgaatgctgtgctgcagttctac
ggcttgtacgtgaactatcgtcacttggctttgttgtgtgacgtaatgacggctaagggt
cacttgatggccatcacacgtcacggcatcaatcgacaggatactggtgcacttatgcgt
tgctcattcgaagaaacggtcgatgtgttgatggatgccgccgcgcatgcggaaaccgat
ccgatgagaggtgtgtccgaaaacattattatgggccaattgccgcgtatgggcacaggt
tgtttcgatttgctgctcgatgctgagaagtgtcgctacggcattgaaataccgagcaca
ttgggctcgagcatgattggcggttcggcaatgttcttcggcgccggtgctacgccgagc
atgacaccacccatgacaccttgggtacaatgcggtacaccacgctatttctcgccatct
ggacaaatgagtggcatgacacctggcggtcccagcttctcgccgtcagccgcctctgat
gcttcgggcatgtcaccaagttggtctcccgcacatcctggctcttcgcctagttcacct
ggcccctcgatgtcaccatatttaccaccatcgcccagcgtttcgccatcgtattcgccg
acaagtccaaattatactgcttcatcaccgggtgctgcttcacccaattactcaccaacc
agtccgaattattcgccgacaagcccattgtatccggccacaagtccacgttactcaacg
acaccgaatttcgcaccacaatcgactggctattcaccatcgaccagcggttattcacca
acatcgccagtctattcgccgacttcaaactatcaatcgtccagtccatcgttttcgggc
agtggcacaaatatgtattcgccgggcagcgcttattcaccaacatcttcgaattactcg
ccaaattcaccgagttattcgcccacatccccgtcttattcaccttccagtccctcgtat
tcaccaacttcaccatgctattcgccaacgtccccttcatattcaccgtcatcaccaaac
tacacaccagttacaccatcatattcaccaacctcacccaattattcggcttcaccacac
tattcgcccgcttcaccggcatattcgcaaacaggtgttaaatattcacccacttcacca
acttattcgccgccatcaccatcgtacgatggctcacccggttcaccacaatatacgccc
ggttcgccacagtactcgccggcttcgccgaagtattcaccaacatcgccactttattcg
cccagctcaccgcagcattcaccggccaatcaatacagtcccactggctccagttactcg
gccacaagtccacgctattcgcccaacatgtcgatctactcaccgagtagcaccaaatat
tcaccaacatcgccgacatacacaccgaccgcacgcaattactcgcccacatcaccgatg
tattcgccgacggcaccatcacaaggctatagcccaaccagtccagcatattcgccgagc
agtccaacattcgaagagagtgacgattaa
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integrated database retrieval system
