Brassica oleracea (wild cabbage): 106296181
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Entry
106296181 CDS
T04124
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106296181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boe03400
]
106296181
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106296181
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
106296181
FA (Fanconi anemia) pathway
Downstream FA components
106296181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
Motif
Other DBs
NCBI-GeneID:
106296181
NCBI-ProteinID:
XP_013587712
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All DBs
Position
C5:complement(10447047..10458911)
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AA seq
1249 aa
AA seq
DB search
MVSTTAKSESKQTPKNVYQIGGLQVEFPYQPYGTQLAFMSRVISTLDRAQRDGHCHALLE
SPTGTGKSLSLLCSVLAWQQNHKTRLLKGNLTHSSKATPEAATDPLNHGGGFIPETQPAD
TPLASNNKEPAETATKKKPKVPTIYYASRTHSQITQVIREYKKTGYRVPMAVLASRKHYC
TNRHVHGKENVDEECRLLLKDKTNIQCSEFKNVSKITSHPSLQQRGHNEIHDIEDLVKVG
KSVRGCPYYAAWSLAENAELIFFPYSYIVNPVIRAGVEVDLKGAIIIFDEAHNMEDIARE
AGSINLDEETLFKLQSELEQMSVAQPMIYQPLCEVVEGLISWIGRKKDSLEKRDFQHYFS
SWTGDKALKELEESNITRECFPILLNCFTKAIRTSKEAEMESDMLHLSGISVLTLEELFA
SLTYFFSRNGSHILDYQLGLQRSTKRGDSSGTWTHTFSLWCMNPSVVFKDLADLSLSIIL
TSGTLSPMNSFSSELGMQFGTCLEAPHVIDINLQVWAGAISNGPGNYPLNGSYKTADSYS
FQDALGKSLEEVCTIVPGGSLVFFPSYKLMEKLCTRWRETGQWSRLCLKKDLFVEPRGGA
QDDFDSVLKGYYDSIRGKNRLIGRNRRLKKAGLVKTEFQDDSKKGAAFLAVCRGKVSEGI
DFADDNARAVIIVGIPFPNLHDLQVGLKKKYNDMYKSSKNLLGGSDWYCQQAYRALNQAA
GRCIRHRFDYGAIIFLDERYREQRNRASISKWLRQSIKLYDNFEESMEGLRSFFNSAKER
VDSKMLGSQDHTVEQNFSSEYLRKECIKKENQIQMECNHEEPKGKKVVKVEDNTSSNPKY
DFMNEDWKPKIAGGSRSMRLSGVNYGTSISQLSSVGDIPSQTFIQVKEEEVIDLECEVQP
EPGYCEVSSVTNCDEDPETAFVKEISGMFKGISGASPCSCSKNESSSPATGLRSPRSPDE
FLKQRKSTGNLRKSPLGAESPLSMSVNSHALKRRKFTSSPVIDLEEENSNAPSTSTRPTD
HTSFTRRIEFGLGSTESRSQNDNVYAFPEVNQRVMKISCSLCRSSLGRPENHSHPRCVLT
SSSKTYLLSLLKETLGTGPEEMATSVSVVMTDCALVNQRLCRSSESAIGQGVWCQRDGCV
FNTIFCPFCSIPNRCLGVQVKATDSSNVQFLSKILFFADQVDVTEDDASKETALKHEKSP
DVSNTDADKSDVFKSIERFAYSPTQQQDSGGWRTTKSKLRLPKRTSKTA
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggtttccacaaccgccaaatcggaatcgaaacaaacccctaaaaacgtctaccaaatc
ggaggcctccaagtcgaattcccttaccagccctacggaacccagctcgccttcatgagc
cgcgtcatatccacgctcgatcgcgcccagagagacggccactgccacgcgctgctcgag
tctcccactggtactggcaaatctctctccctgctctgctcggtgctcgcttggcagcaa
aaccacaaaacgcggcttctgaaagggaacctgacgcattcatcgaaagctacgcctgag
gcagcgaccgatccgttgaatcacggaggtggattcatacccgaaactcagcccgcagat
actcctttggctagcaataataaggagccagctgagactgcaactaagaagaaacccaaa
gttcctacaatatactatgcttcacgaactcattctcagattactcaagtcattcgtgag
tataagaagactggttacagagttcccatggctgtcttggcttcaagaaagcattactgt
actaatcgtcatgtacatgggaaggagaatgtagatgaagaatgtcggttgctcctaaag
gataagacaaacatacaatgttctgagtttaagaacgtcagtaaaatcacatctcaccct
tcgcttcaacagagaggtcataatgagattcacgatattgaagatcttgtcaaagttggg
aaaagtgtaagaggctgtccatattatgctgcctggtcattggcggagaatgcagaactg
atttttttcccttattcatacatagttaatcctgtcattcgagcaggagttgaagtagat
ctgaaaggagcgattataatatttgatgaagcacacaatatggaagacattgctcgtgaa
gcaggaagcattaacttggacgaagagactcttttcaaattgcagagtgaactggaacag
atgagcgtggcccagccaatgatatatcaacctttatgtgaagtagtagagggattgata
agctggattggaagaaaaaaggattctctagaaaaacgtgattttcagcactatttctct
agctggactggagataaagctttaaaagagctcgaggaatctaatattactcgggaatgc
ttcccaatcttattgaattgctttacaaaggcgatcagaacatcaaaggaggcagaaatg
gaatcagatatgcttcatttaagtgggatctctgttttgacactagaagagttgttcgct
tcacttacatacttcttttcaagaaatggaagtcacatcttagattaccaactgggttta
caacgctctacaaaaagaggagattcttctggtacctggacgcatactttcagcttatgg
tgtatgaatccgtccgttgttttcaaagacttagctgatctttctttatccatcatttta
acatccgggactttgtcaccgatgaattctttctcatctgaacttgggatgcagtttggc
acttgtttagaagctccacatgtaattgatattaatctgcaggtgtgggctggtgcaatc
tccaatggtcctggtaattatcccctaaatggaagttataaaacagctgattcatactca
ttccaggatgcgctagggaaatcgttggaagaagtttgcactattgttccaggaggctcg
cttgtattctttccaagctataagttgatggaaaaactctgcactcgttggcgtgaaact
gggcaatggtctcggctctgcttgaagaaggacctctttgttgagccgagaggaggagcc
caggatgacttcgattctgttctgaagggttattatgattctatccgcgggaagaacaga
ttgattgggagaaatagaagattaaagaaagcagggctggttaaaactgagtttcaggat
gattccaagaaaggagctgcatttttggcagtttgtagaggaaaggtttcagaaggaatt
gactttgctgatgacaacgccagggcggttataattgttggcattccatttccaaacttg
catgatcttcaagtcggactaaagaaaaaatataatgatatgtataaatcatctaagaac
cttcttggagggagtgactggtattgccaacaagcctatcgtgctttgaatcaagcagca
gggcggtgtatccggcataggtttgattatggggccatcatattcttagatgagcgatac
agagaacaacggaacagagcgtctatttcaaagtggctaaggcagtctatcaaactgtat
gataattttgaagaatctatggaagggttaagatcttttttcaacagtgccaaggaacga
gtcgacagtaagatgttagggtcccaagatcatactgttgagcaaaacttttcttcggaa
tacctaagaaaggaatgcataaagaaggaaaatcagattcagatggaatgcaatcatgaa
gagccaaaaggtaagaaggtggtgaaagtagaggacaatacaagttcgaatccaaaatat
gattttatgaatgaagactggaaaccaaaaatagccggaggctcgagatccatgcggctt
tctggtgtgaactatggaacctccatttctcagttatcatctgtaggtgacataccttct
caaacattcattcaagttaaagaggaagaagtcattgaccttgagtgtgaggtccaacct
gagcctgggtattgtgaggtgtcttctgtaaccaattgtgatgaagatccagaaacagca
tttgttaaggaaatctctggtatgttcaaaggcatttctggagccagtccatgttcttgc
tcgaagaatgagagctctagcccagcaacaggtttgagatctccgaggtctcctgatgaa
ttcctgaagcagcgtaaatctactggaaatttaagaaaatctcctcttggagctgagtca
cctctgagcatgagtgtaaattcccatgctttgaagagaagaaaatttacaagctctcca
gtcattgaccttgaagaagaaaacagcaatgctcctagtactagtaccagacccacagat
cacacaagtttcaccagaagaattgaatttgggttagggagtaccgaatcaagatcccaa
aacgacaatgtatatgcttttccagaagtgaatcagagggtgatgaagatatcttgttcc
ctctgcagaagttctttaggtcgccctgagaaccactcacatcccagatgcgtgttgact
tcgtcgtccaaaacgtatctgctgtctcttctgaaggaaacattaggaaccggtcctgaa
gaaatggcaacaagtgtttcagttgtcatgacagattgcgcattagttaatcagagactc
tgcagaagttctgaaagcgcaataggccagggagtttggtgccagcgagatggatgtgtt
ttcaatactatcttttgccctttctgtagtatcccaaataggtgtcttggagtgcaagtt
aaggctactgattcatcaaatgtccagtttctcagcaaaattttgttctttgctgatcaa
gtagatgtcacagaagatgatgcaagcaaggaaacagcgttaaagcatgagaaatctcct
gatgtcagcaatacagatgcggacaagagtgatgtgtttaagtcaatagagagatttgca
tactccccaacgcaacagcaagattcaggaggctggaggactacaaaatcaaagttgaga
ctaccgaaacgcacaagcaaaactgcctag
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