Brassica oleracea (wild cabbage): 106323587
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Entry
106323587 CDS
T04124
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03020
RNA polymerase
boe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106323587
09124 Replication and repair
03420 Nucleotide excision repair
106323587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106323587
03400 DNA repair and recombination proteins [BR:
boe03400
]
106323587
Enzymes [BR:
boe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106323587
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106323587
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106323587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
106323587
NCBI-ProteinID:
XP_013617141
UniProt:
A0A0D3A1P5
LinkDB
All DBs
Position
C1:1839459..1846684
Genome browser
AA seq
1839 aa
AA seq
DB search
MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVMHVEHSETTEKGKPKVGGLSDARLGTI
DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILAHEEEHK
FKQAMKIKNPKNRLKKILEACKNKTKCADDDNLEDVQSQDMDGPVKKIRGGCGAVQPKLT
IEGMKMIAEYKITRKKNDEQDQLPERAEMKKTLGADRVLSVLKRISDEDCQLLGFNPKYA
RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKSGAPAHII
SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGAKYII
RDDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIRIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI
NLFRYSAWHSDQETGYITPGDTQVRIERGELLAGTLCKKTLGTGNGSLVHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISTAKTAVKDLIRQFQEKK
LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFEGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKSEFDRTFKYEIDDVNWNPAYLSDEHLEDLKGIRELRDVFDAEYQKLEADRY
QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDLHPVEIVDAVDKLQERLLVV
PGEDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFVQSLVSP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
TPEASRSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDYEFVRSYYEMPDED
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI
MNDEGAKGEGQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSKFDEEEGFK
TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIMEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD
CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFVGMTPARSPFSG
TPYHESMMMTPNYLLTPNVRSSPTSDAQFSPYVSGMAFSPSSSPGYSPASPGQSSASPGY
SPTSPYYSPTSPIYSPTSPNYRPTYSPTSPTYSPTSPIYRPTYSPTSPYYSPTSPTYSPT
SPYYSPSSPGSSPTSPSYSPTSPSYYSRTSRSYSPTSPAHKAYSPTSPAYSPTSPSYIAT
SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGSTSPSYNPQSAKYCPSLAYS
PSDARLSPASPGYSPTSPNYSPTSPSYSPTSPSYSPSSPTHCPSSPYSSGASPDYSPSAG
YSPTLPGYSSSSTGQYTPHEGYENDKTGEDASKDGKSSP
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atggatacacggttcccgttctctccggctgaggtctcaaaagtccgtgtggtccagttt
gggattctcagccccgatgagatcaggcaaatgtctgttatgcacgttgagcatagtgag
accaccgagaaaggtaaacccaaggttggaggattgagcgatgctcgtctcggtacgatt
gatcggaaggtgaagtgcgagacgtgtatggctaacatggctgagtgccctgggcatttc
gggcatcttgagctcgctaagcctatgtaccacgtcggttttatgaaaacggtgttgagt
atcatgcgttgcgtttgcttcaattgctccaagatcttagctcatgaggaggagcataag
tttaaacaggctatgaagataaagaaccccaagaatagacttaagaagattctggaagcg
tgcaaaaacaagactaaatgtgctgatgacgataatctcgaggacgttcaaagccaagac
atggacggacccgtgaagaagatccgtggtggatgtggtgcagtgcaaccgaagctgact
atcgagggcatgaagatgattgctgagtataaaataacgaggaagaagaacgacgagcag
gaccagcttccagagcgtgcagaaatgaaaaagacgcttggtgctgacagggttttgagt
gttttaaagaggattagcgatgaggattgtcaactcctagggttcaaccccaagtatgct
cgtcctgactggatgattctagaagtgcttcctatccctccaccccctgttagaccatct
gtaatgatggatgctacttccagaagtgaggatgacttgactcatcagcttgcaatgatt
atccgacacaacgaaaacttgaaaagacaggagaaaagtggagcaccagctcatattata
tcagagttcacacagctcttgcagtttcatatagcaacttattttgataacgagttgcct
ggacagccaagggctactcaaaaatcagggaggcccattaaatcaatatgtagtagactg
aaggcgaaggaaggcagaatcaggggaaatttgatgggaaaacgagttgatttctctgca
cgtactgttattacaccggatccaacgataaatatcgatgaacttggtgtaccgtggagt
atagccttgaatctcacataccctgaaacagttactccatataacattgaaagattaaag
gagctggtggataatgggccacatcctccacctggcaagactggagctaaatatatcatt
agagatgatggccaaagactagaccttcgttaccttaagaagagcagtgatcatcatttg
gaacttggatacaaagtggagcggcacttaattgatggtgactttgttctgtttaatcgt
caaccaagtcttcacaagatgtctatcatgggtcacaggattaggatcatgccatactcc
actttccgactgaacttgtctgtcacttctccttacaatgctgattttgatggggacgag
atgaacatgcatgtaccacagtcattcgagactagagccgaggtgttggagctgatgatg
gttcccaaatgtatagtctccccccaggcgaatcggcctgtgatgggtattgtgcaagat
acacttctaggatgccgtaaaattacaaagagagataccttcattgagaaggatgtattc
atgaatacgcttatgtggtgggaagacttcgatgggaaagtcccagctcccgcaattttg
aagcctcgtcctctttggactggcaaacaagtctttaatcttatcataccaaagcagata
aatctattcaggtactctgcatggcactcagatcaagagacgggatacataactccaggg
gatactcaagtgagaattgaaagaggggagcttctcgctggaactctctgcaaaaagacc
cttggtaccggtaacggaagtctcgtgcatgtcatttgggaagaagttggacctgatgca
gctagaaaattccttggccatactcaatggcttgtcaactactggctactgcagaatggt
ttcaccattggaattggtgacactattgctgattcgtcgacgatggagaaaattaacgag
actatatctactgccaaaactgctgtgaaagaccttatccgtcagttccaggaaaagaaa
ctggaccctgagccggggagaactatgacagagacatttgagaacagagttaaccaggtc
ttgaataaagctcgtgacgatgctggaagcagtgctcaaaagagtttagcagaaaccaac
aacctcaaggccatggtgacagcaggatccaaaggaagtttcattaacatctctcagatg
acagcgtgcgttggtcagcagaacgtggaagggaaacggatcccgtttggtttcgaaggg
cggacgttgcctcatttcaccaaagatgattacggtccagagagccgtgggttcgtggag
aattcgtacctgcgtgggttgactccccaggagttctttttccacgcaatgggaggaagg
gaaggtcttatcgataccgctgtgaagacatcagagactggatacatccagaggcggttg
gtcaaggccatggaggatattatggttaaatatgacgggacggtgagaaactcgttgggc
gatgttattcagtttctctatggggaagatggtatggacgctgtgtggatcgagtcacag
aagctggactctttgaaaatgaagaagtctgagttcgacaggacgttcaagtacgagatt
gatgacgtcaactggaatccagcttacctaagcgacgaacatcttgaggacttgaaaggg
atccgggagctgcgtgacgtgtttgatgctgagtatcagaagcttgaggctgacagatac
caactcggcactgagattgctacaaacggtgatagcacttggccgttacctgttaacatc
aagaggcatatctggaatgcgcagaagactttcaagattgatttacgcaagatctcggat
ttgcacccggttgaaatcgttgatgcggttgataagttacaggagaggttgctggttgtt
cccggtgaagatgcactgagtgtagaagctcagaaaaacgccacgctgttctttaacatt
ttgcttcgcagcactctcgctagtaaaagagttttggaggagtacaagctcagccgcgag
gcttttgagtgggttattggtgagatagaatcgagatttgtgcagtcgcttgtatctccc
ggggagatgattggttgtgttgctgctcagtctattggagagcctgctacgcagatgact
ctgaacactttccattacgctggtgtcagtgcgaagaatgttaccctcggtgttccaagg
ctgcgagagattattaacgttgctaaacggatcaagacaccttctctatctgtctacctc
acaccggaagctagcagatcaaaagaaggggccaaaactgttcaatgtgctttggagtat
actactctcaggagtgtcactcaagctacggaggtctggtatgacccggatccgatgagt
actataatagaagaagattatgagtttgtgaggtcatactacgaaatgcctgatgaagat
gtttctccggataaaatatctccttggctgcttcgtatagagctgaaccgcgagatgatg
gtcgataagaagctgagtatggcggatattgctgagaagatcaaccttgagtttgatgat
gatctgacttgcattttcaatgacgacaatgctgagaaactgatccttcggattcgtatt
atgaacgatgagggagcaaagggagaagggcaagatgaatcagctgaggatgatgtgttc
cttaaaaagattgagagcaacatgctgacggagatggcgctgaggggtattccagacatc
aacaaggtgttcatcaaacaggttaggaaaagcaagtttgatgaggaggaagggttcaag
acgtctgaagagtggatgttagatacagaaggtgttaatctgttggctgtgatgtgccac
gaagatgtggatccaaagaggacaaccagcaatcacttgattgagattatggaagttctc
ggaatcgaggcggttcgccgtgctttgttggatgagcttcgagttgtgatatcctttgat
ggctcctatgtgaactaccgtcatcttgccatcttgtgtgatacgatgacctatcgtggt
catctgatggcgatcactcgacatgggatcaacagaaacgacactggccctctgatgagg
tgctcgtttgaagaaacggttgatattctactggatgctgcggcttatgctgagacggac
tgcttgcgtggcgtgaccgagaatataatgcttggccagcttgcaccaattggaacagga
gattgtgagctgtatctgaacgatgagatgctgaagaatgctattgaacttcagctccct
agctatatggatggcctggagtttgttggaatgactcctgctcgctcaccattttcaggc
actccttatcatgaaagcatgatgatgacaccaaactacctcttgactccaaatgtgcga
tcgtcgccaacgtcagacgcacagttctctccgtatgttagtggaatggccttttcacct
tcttcatctccaggttacagcccagcatccccaggacaaagttctgcttcccccggttat
agcccgacttctccctactacagtcccacttcccccatctacagtcccacttcccccaac
tacaggcccacctacagtcccacttcgcccacctacagccccacttcgccaatctacagg
cccacctacagtcccacttcgccctactacagtcccacctcgcccacatacagtcccact
tcgccctactacagtcccagttctcctggctctagcccaacaagtccttcctattctccc
acttcccctagctattatagtcggacatcccgaagttacagtccgacatcaccggctcac
aaagcttacagccctacttcccctgcatacagccccacctctccatcttacatcgctact
tcaccatcttacagcccaacttcgccttcttacagtcccacttcacccgcatacagccct
acatctcctggctacagcccaacttcaccaagctacagtccaacctcacctagttacggg
tctacgtctccaagctacaatcctcagtctgctaaatattgtccatctttggcttactct
cctagcgatgcaaggctatcaccagctagccctggctacagtcctacatcaccaaactac
agccctacatcaccatcgtactcgcccacttctccatcgtattcaccttcaagtccaaca
cactgtcccagcagcccatacagctcaggagcaagccctgactacagcccaagcgcaggc
tactcaccaacacttcctggctattcttcttcatccaccggtcagtatacaccacacgaa
ggctatgaaaatgacaagactggagaagatgccagcaaggatggtaaaagcagcccttga
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integrated database retrieval system
