Brassica oleracea (wild cabbage): 106343991
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Entry
106343991 CDS
T04124
Name
(RefSeq) pseudouridine-5'-phosphate glycosidase 2-like isoform X1
KO
K16329
pseudouridylate synthase [EC:
4.2.1.70
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00240
Pyrimidine metabolism
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
106343991
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.70 pseudouridylate synthase
106343991
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Gene cluster
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Motif
Pfam:
Indigoidine_A
DUF6750
Glyco_hydro_127
Motif
Other DBs
NCBI-GeneID:
106343991
NCBI-ProteinID:
XP_013638813
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Position
C5:26010803..26013390
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AA seq
333 aa
AA seq
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MASSSSSAALYRISNLQNHISPLEANNKLRSLVKISPQVSEAISSGRAVVALESTIISHG
MPYPQNLQTAKEVESIVRENGAVPATIAILNGVPCIGLNEDELERLASLGKGVQKTAGRD
IAYVVATRGNGATTVSATLFFASMVGIQVFVTGGIGGVHRHANQTMDISSDLTALGRTPI
AVISAGVKSILDIPKTLEYLETQEVYVAAYKSDEFPAFFTEKSGCKAPSRVDSPEDCARV
IDANKKLNRQAGILFAVPIPKQHSAAGNLIESATQRALTEAREQNVTGNAETPFLLARVN
ELTGGTSLAANIALVKNNALIGSQIAVALSQLT
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcttcttcttcggctgctctttatagaatctcaaatctccagaatcatatc
tcccctcttgaagccaacaacaagctaaggagtctggtgaagatatctccacaagtatct
gaagccatatccagtggacgtgctgtggtcgctcttgagtcaaccattatctcccatggg
atgccttaccctcaaaacctgcaaacagcaaaagaggtggagtctattgtgagagagaat
ggagcagttcctgccacaatagctatcttgaacggagttccttgcataggtctgaacgaa
gacgagcttgaacgtcttgcatctctggggaaaggtgtccaaaagactgcaggcagggac
atagcatatgttgtggctacaagaggaaatggtgctactacagtctctgcaaccttgttt
ttcgcttctatggttggcatccaagtctttgtaaccggtggaattgggggtgtacatagg
catgccaaccaaactatggacatatcatctgatcttactgcacttggaaggactcctata
gctgtgatatcagcaggcgttaaatccatacttgatattccaaagactcttgaatatttg
gaaactcaagaagtgtatgttgctgcatacaagagcgatgagtttccggcatttttcaca
gaaaaaagcggctgtaaggcaccttctcgtgtagatagccctgaagactgtgctcgagta
atagatgcaaacaagaagctaaaccgtcaggcagggattctgtttgctgttccaatcccg
aaacagcattcagccgctggaaatcttatagaatcagcaacacagcgtgctcttacagaa
gcaagggaacaaaacgttacgggaaatgcagaaactccgttcttgcttgcacgggtaaat
gagttaactggaggcacttcacttgcagcaaacattgcgcttgtgaaaaacaatgcactt
atcggttctcagattgcggtagccctttctcagctaacgtga
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