Bipolaris oryzae: COCMIDRAFT_9124 Help Entry COCMIDRAFT_9124   CDS       T03125                                  Name (RefSeq) hypothetical protein   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism bor  Bipolaris oryzae Pathway bor03020   RNA polymerase bor03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:bor00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     COCMIDRAFT_9124   09124 Replication and repair    03420 Nucleotide excision repair     COCMIDRAFT_9124  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:bor03021]     COCMIDRAFT_9124    03400 DNA repair and recombination proteins [BR:bor03400]     COCMIDRAFT_9124 Enzymes [BR:bor01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      COCMIDRAFT_9124 Transcription machinery [BR:bor03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      COCMIDRAFT_9124 DNA repair and recombination proteins [BR:bor03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       COCMIDRAFT_9124 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R NosL Motif Other DBs NCBI-GeneID:  19127841 NCBI-ProteinID:  XP_007692367 JGI:  Cocmi1_9124 UniProt:  W6YNZ8 LinkDB All DBs Position Unknown AA seq 1737 aa AA seqDB search MPPGAPLQSKCPLRTIKEIQFGLLSPEEIKAMSVVHILYPETMDEQKQKPREQGLNDPKL GTIDRMYSCATCKEDIQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGMIKADFN HPDWQAAARTKDAKKRFDKIWRMSRTKNVCVQDVEESGKETKVPKIPHGGCGSRQPDTIR KEGLKLTGTWKQSKKDDDDGQGDRKEVITPKQAQTIFKLLSDNTLALLGLNADYARPEWM ILDVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANQRVAECQQEGSPQHVTAE FEALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSART VITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPGANYVIKADGV RLDLKHNKNLDDLRLQYGWKVERHINDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLN LSVTSPYNADFDGDEMNLHVPQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGV YKMTRRDNFIPIEQVMPIMMWVPDWDGILPEPAILKPRPLWTGKQIVSMAFPREVNIEKK EDDSTPSKDNDIKDKSLMIKGGQLIYGQVTKKIVGASAGGVIHIVFNELGPDAAVKFFNS CQRICNWWLLHYGFSFGVGDTIPDPRTSEKIASEISKSKVKVEDIIATATKDQLEPLPGM TIRGTFESKVQKFLNEGREGGGTAAQNSLKDFNNVVQTVVSGSKGSTVNISQMVALVGQQ AVEGQRIPFGFKYRTLPHFSKDDYSPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDTA VKTAETGYIQRRLVKALEDVMVKYDGTVRNSMGDIVEFIYGEDGLDGAHIEKQSMDIIMS SEPAFEAAYKLDVLTTDQPEIPVWKLESSPLFQGDVDVQRALDEEFEAIKSDREYLRANA SEDDLETFQLPLNIARMIRSAQARFGINPEKAASNLHPIETIKQVRETLDRLVVIRGTDE LSREAQDSATYLFKAHLRARLAFKKLAVEHRLNKEALSYVLGELEDRFLKAAVAPGEMVG VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNIAANIKTPSMLVRQADAKA SQQQAKLLRSTIELTTLRSLTQAVELYYDPDIQSTLVEDDQDMVESYFILPEEDEVIESQ SKWLLRIILDRKKLLDKSITIGEVAGKIKEEFKPNLAVIFSDENADEQVMRVRFIWDQNL QKDDEDEDERDERWMRKLEKHLLDDVTLRGVRGVERAFIREHTVTVEKEDRSLMHSKNND LCKEWVLDTTGTSLAEVLAIEGVDATKTYSNSFIEILGVLGIEAARAGLLKELGMVLSFD GSYVNHRHMALLVDIMCQRGLLMAITRHGINRNDTGALMRCSFEETVEILLEAAGFGELD DCRGVSENIMLGQLAPMGTGEFDVVMDNAMLLTMVEDNSKAMGAAAGNYVVGGADTPYLN SPTYEGGIGIGSYDQVSFSPIAAAGGSGDTGGFTDYGGTYGGGLSPFDGGRSPGSGFTGM SPGFTSPVSPGFSPTSPGYSPTSPGIASPRFAATSPGYMASPTSPHYSPTSPRYGSPTSP SYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQ YQAGSDRRSPTSPTSPQYSPTSPRYSPTSPAGAFSPTSPRYSPTSPGQAYSPTSPKQ NT seq 5214 nt NT seq  +upstreamnt  +downstreamnt atgcctcccggcgcgccacttcagtcaaaatgtccgctccggacgatcaaggagatccag ttcggtctgctctcccccgaggagatcaaggccatgagcgttgtccatatcctctaccca gaaaccatggacgagcagaagcagaagccgcgtgagcaaggtctcaacgatcccaagctt ggcaccattgaccgcatgtactcatgcgcgacctgcaaagaggacatccaggtctgccct ggccactttggccacattgagttgcacacgcctgtttttcacgttggatttgtcgtcaag atcaagaagctcctcgagaccgtctgccacacttgtggtatgatcaaggctgacttcaac catcccgactggcaggcagctgccagaactaaggatgccaagaagcgcttcgacaagatc tggcgcatgtcgcggactaagaacgtgtgtgttcaggatgtcgaagagagcggcaaggaa accaaggtccccaagattccccatggcggctgtggcagcaggcagcccgataccatccgt aaggagggtctcaagctcaccggaacctggaagcagagcaagaaggatgacgacgacggt cagggcgaccgtaaggaagtcatcacccccaagcaggcgcagacaatcttcaagctcctg tctgataacacgcttgccctgctcggtctgaacgccgactacgcccgtcccgaatggatg attcttgatgtccttcctgtgccgcctcctccagtcagacccagtatctccgtcgatggt actggtcaaggtatgcgtggagaagatgacttgacatacaagttgggagacattatccgc gccaaccagcgtgtagccgagtgtcaacaagagggctcgccacagcacgtcactgctgag tttgaagctcttgtacagtaccatgttgcaacatacatggataacgatgccaacggtgtt ccgcaagccatgcaaaagtctggtcgtcctctgaagacgatccgtggacgattaaaggga aaggagggccgtcttcgtggcaacttgatgggaaagcgtgtcgacttctccgcacgtaca gtcatcactggtgaccccaacctgtcgttggaccaagtcggtgttcctcgttccattgca cgaacgctcacctaccctgaagttgtgaccaagttcaacatcagcaaattgaccaacttg gtacgcaacggtccaaatcagcatcctggtgccaactacgttatcaaggccgacggcgtt cgtcttgaccttaagcacaacaagaatcttgacgacttgcgactgcaatacggatggaag gtcgagcgtcacattaacgatgacgacgtcatcatcttcaaccgtcaaccctctctgcac aaggagtccatgatgggtcatcgcgtgaaagtcatgccttactccaccttccgtctcaac ctgtccgtcacatctccttacaacgccgatttcgacggtgacgagatgaatctccacgtt cctcaaagcgatgaaactcgtgctgaagtccagaatctgtgcatggtgccaaagcaaatt gtatcgccccagaagaatcagcccttgatgggtatcgtgcaggacacgcttcttggtgtt tacaagatgactcgtcgtgacaatttcattcctatcgaacaagtcatgcccatcatgatg tgggtccctgactgggacggcatcctgcctgagccagccattctcaagccccggcctctc tggaccggtaagcagattgtcagcatggctttccctcgtgaggtcaacatcgagaagaaa gaagatgactctacgccgagcaaggacaatgatatcaaagacaagagtctgatgatcaaa ggtggccaactcatctatggtcaagtcaccaagaagattgtcggtgcttcggctggcggt gttattcatattgtattcaacgaactcggccctgacgcagctgtcaaattcttcaactcc tgtcaacgaatctgcaattggtggcttctccactacggcttcagtttcggtgtgggtgac accattccggatccccgcacttctgaaaagattgcgtccgagatttcaaagtccaaggtc aaggttgaggacatcattgcgacggcaacaaaggatcagcttgagcctttgcctggtatg actatccgtggtacttttgagtccaaggttcagaagttcctgaacgaaggtcgtgaggga ggtggtactgccgcccaaaacagtttgaaggatttcaacaacgttgtccagactgtcgtc tctggttcaaagggttctacagtcaacatctctcaaatggttgccctcgtcggtcagcaa gccgtggagggtcagcgtattccgttcggtttcaagtacaggacgttgccacatttctca aaggacgattactcgcccgagtctcgtggtttcgtcgagaactcataccttcgtggtctt acgccttctgagttcttcttccacgccatggctggtcgtgaaggtttgatcgatacagca gtcaagacggccgagacaggttatattcaacgtcgtttggtcaaggccctcgaagacgtc atggtcaagtacgatggaactgtccgtaactcgatgggagatattgttgagttcatctac ggtgaagatggtcttgacggtgctcatatcgagaaacagtcgatggatatcatcatgtcc tcggagcctgccttcgaggcggcatacaagctcgacgtcctgaccactgaccaaccagag attcctgtgtggaagctcgagagctctcccttgttccaaggtgatgtcgacgtgcagcgc gctcttgacgaagagttcgaggctatcaagagcgaccgtgaatatcttcgtgcaaacgcc agcgaagatgatctggagactttccagctgcccctcaacattgcacgcatgattcgttct gctcaggcgaggttcggcatcaacccagagaaggccgccagcaacctccacccaattgag accatcaagcaggtccgcgagactcttgatcgcctagttgtcattcgtggtaccgacgaa ctttccagggaggcccaggacagcgccacctaccttttcaaggctcacttgcgggcacgt cttgctttcaagaagcttgcggttgaacatcgtctcaacaaggaggcactaagctacgtg ctaggagaattggaggaccgtttcctgaaggctgctgtcgcgcctggtgagatggtcggt gtccttgcagcccagtccattggtgaacccgccacacagatgacgctcaacactttccat tttgctggtgtgtcttccaagaacgttacactcggtgtgccacgtctcaaggaaattctg aacattgctgcaaacatcaaaactccttctatgcttgtccgtcaagcagacgccaaggca agtcaacagcaggcgaagctgctgcgaagcactatcgagcttacaaccctccgttcactg acgcaagccgttgagctttactatgatcctgacattcaatctacgcttgtcgaagacgat caggatatggttgagtcctatttcatcttacctgaagaggacgaggtcatcgagtcgcag tccaaatggctgctccgtatcattctcgatcgcaagaagctcctggacaagagtatcact attggtgaagttgccggcaagatcaaggaagagttcaagcccaatcttgcagtcatcttc agtgacgaaaatgcggatgagcaggtcatgcgtgtccgtttcatctgggatcagaatctt caaaaggacgacgaggatgaggatgagcgagatgagcgatggatgcgcaagcttgagaag catcttcttgacgatgtcacccttcgtggtgttcgtggtgttgagcgtgctttcattcga gagcacactgtcactgtcgaaaaggaagacaggtccttgatgcactcaaagaacaacgac ctgtgcaaggaatgggttcttgacactactggtacttccctggctgaagtgctggccatt gagggtgtggacgcaactaagacatactccaactctttcatcgaaatccttggagtactt ggtattgaagcagctcgagctggtcttctcaaggagttgggtatggtcttgtcctttgat ggttcttatgtcaaccatcgccacatggcattgcttgtcgacatcatgtgccaacgcggt cttctcatggctatcactcgtcacggtattaaccgaaacgatactggtgctctgatgcgt tgttcattcgaagagactgtcgaaattcttcttgaggctgctggcttcggtgagcttgac gactgccgcggtgtttccgaaaacatcatgcttggtcagcttgcaccaatgggtaccgga gagtttgatgtcgtcatggacaatgctatgctgctcaccatggttgaagacaactccaag gcaatgggggctgctgcaggcaactacgtagttggcggtgcagacaccccgtacctcaac tcgcctacatacgagggcggtattggcattggctcctatgaccaggtatccttctcgccc attgctgccgcaggtggcagtggcgatacaggtggctttacagactacggaggcacctat ggtggtggcctgagtccgtttgacggaggcagaagtccaggctccggcttcaccggtatg tctccaggcttcactagccccgtgtcgccaggcttctctcctacctcgcccggctactcg cctacttctccaggaattgccagtcctcgttttgctgctacatctccgggatacatggcg tctcctacctcgccccactactctccgacttcccctcgttatggatcgcctacgtcgcct tcatactcgcccacatctccagctggctactccccgacgtcacctcaatattcaccaacc tcgccaaactacagcccaacatcccctacatttatgggcggtgctacttcgcccgcgtac agtccgacgtcgccacagtacagtccgacgtctccccagtacagtcccacaagtccacag taccaagcaggcagcgatcgtcgctctcccacctctcccacatcccctcagtacagcccg acgtctccccgatactcgcccactagccctgctggtgccttttcgccaacctccccaaga tacagcccgacttctccgggtcaggcgtactctcccacatctccaaagcaataa

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