Bipolaris oryzae: COCMIDRAFT_99441
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Entry
COCMIDRAFT_99441 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
bor
Bipolaris oryzae
Pathway
bor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCMIDRAFT_99441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_99441
Enzymes [BR:
bor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
COCMIDRAFT_99441
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
COCMIDRAFT_99441
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_N
CLP1_P
Clp1
ATP_bind_1
SRPRB
MMR_HSR1
AAA_16
AAA_7
TniB
AAA_24
AAA_35
ABC_tran
Roc
GpA_ATPase
ATPase_2
Motif
Other DBs
NCBI-GeneID:
19129470
NCBI-ProteinID:
XP_007689526
JGI:
Cocmi1_99441
UniProt:
W6Z8R5
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MISLPGLNLSSQPIEPQNTPTSVATRTQELSANTEYRFEVSFSRTLTVKLQSGTAEFFGT
ELAPSTIYSFSGTKGAIFTWHGCKLDIGGEVESDYIAEETPMMSVANLHFALENLRDKSV
SSGSVEMGPRVLVVGPENSGKTSLVKTLTSYAVKTDRQPMVVNLDPRQGMLSVPGSFSAA
AFSSIVDIEEGWGSSPISGPSPIPVKMPLVYHYGLRDPEEGRVFKPLVTRMALAVTSRLE
EDKLSKQAGFIIDSSGAISHGKNGVYDNIEHIVSEFSVNIIITLGSERLYSDLLRKFSAR
PSTTTDPSESVTVIRLDKSGGCVDRTETYMRALRHAQIKEYFFGHADETLAPSSQTADAA
DLHIFRIVGGGGSGGDADESNGNEAAGFDDYGMPLASSGAGLLFEKAVPGDGMVNHLLAI
TTASPNEGHAVIRDSSVRGYVYVADVDEAKKKVKLLSPLPGQTPGSALILGSWPEPVEGL
VG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgatttctttaccaggtctcaatctatcctcacaacccatcgaaccacaaaatacaccg
acgtcggtagctacacggacccaagaactctcagccaacaccgagtaccgcttcgaagtc
tctttctcccgcaccctcacagtcaaattgcaatcgggaacagctgaattcttcgggact
gaactcgcgccctcgactatctactcgttttcaggcacaaaaggcgccatcttcacatgg
cacggctgcaagctcgatatcggcggagaggtagagtcggactacattgccgaagaaaca
cccatgatgagcgttgcaaacttacactttgcactagagaacctgcgcgacaagagcgtt
tccagcggcagtgtagagatgggtccaagagtacttgtggtggggcccgagaactctggc
aaaacatctctcgtcaagacactgacgtcctatgccgtcaagacagacaggcagccaatg
gtggtgaatcttgatccacgccagggcatgctcagtgtgcctggatccttctccgccgcc
gctttctcgtcaatagtagacattgaagagggctggggcagcagccccatctcgggaccc
agtccgattcccgtgaagatgccgctggtatatcactacgggctgagagaccccgaagaa
ggcagggtgttcaagccgttggtcacacgcatggctcttgctgttactagtagactggaa
gaggacaagctgagcaagcaggctggcttcatcatcgatagctcgggcgcaatcagccat
ggaaagaatggcgtctacgacaacatagagcatattgtttctgagttttctgtcaacatc
atcataaccctcggctccgaacgcctctactcggacctcctccgcaaattctccgcccgc
ccatccaccaccaccgacccctcggaatccgtcaccgtcatccgcctcgacaaatccggc
ggctgcgtcgaccgcacagaaacctacatgcgagctctccgccacgcccaaatcaaagag
tacttcttcggccacgccgacgaaaccctcgcgcccagcagccaaaccgctgatgccgct
gatttgcatattttccgcatcgtcggcggcggcggtagcggcggtgacgccgacgagtcc
aacggaaacgaagcggcgggtttcgatgactacggtatgcctctagcttcttcgggagcg
gggttgttgtttgagaaagcggtgccgggagatgggatggtcaatcatctgcttgcgatt
acgacggcgagtccgaatgaggggcatgcggtaattagggatagtagtgtgagggggtat
gtgtatgtggcggatgtggatgaggcgaagaagaaggtgaagcttttgagtccgttgccg
gggcagacgccggggagtgcgttgattttggggagttggccggagccggtggaggggctt
gtgggttaa
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integrated database retrieval system
