Bombus pascuorum (common carder bee): 132912522
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Entry
132912522 CDS
T09597
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03020
RNA polymerase
bpas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132912522
09124 Replication and repair
03420 Nucleotide excision repair
132912522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpas03021
]
132912522
03400 DNA repair and recombination proteins [BR:
bpas03400
]
132912522
Enzymes [BR:
bpas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132912522
Transcription machinery [BR:
bpas03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
132912522
DNA repair and recombination proteins [BR:
bpas03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
132912522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
132912522
NCBI-ProteinID:
XP_060825994
EnsemblRapid:
ENSBPAG00000008260
LinkDB
All DBs
Position
1:4225103..4235463
Genome browser
AA seq
1902 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSAERKPGHGGCGRYQ
PNLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAILRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFEVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGTAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPNYSPSPGYSPTSPSYSPTSPSYSPTSPSYSPTSSS
YSPTSPSYSPTSPSYSPTSPSYSPSPSYSPTSPSYSSTSPSYSPTSPSYSPSSPNYTPAS
PSYSPTSPSYSPSSPQYSSASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPTYS
PTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTS
PTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atggcaacctccgattccaaggcgcctctgcgaaccgtaaaaagagtacaattcggtatt
ctttcaccggatgaaatacgtcggatgtcggtcacagatggcggcattcgatttccagaa
acaatggaaggtggtcgcccaaagcttggtggacttatggatcctagacaaggtgtcatt
gatagaaattctagatgtcagacatgtgctggtaatatgacagaatgtccaggacacttt
ggacatatagatttagcaaaaccagtttttcatgttggctttataacaaagacaataaaa
attttgagatgtgtatgtttttattgttcaaaacttcttgtcagtccacataatccaaaa
atcaaagaaattgttatgaaaactaaaggtcagccacgaaaaaggcttacttttgtttat
gatttatgtaaaagtaaaaatatttgtgagggtggtgatgaaatggatattaacaaagaa
aatcaagaacaacaatctgcagagagaaaacctgggcatggtggatgtggtagatatcaa
ccaaatctccggagatctggattagatgttactgcagaatggacacacgtaaatgaagat
tcacaggaaaaaaagatggcactaactgcagaaagagcttgggaaattttaaagcacatt
acagatgaagaatcatttattcttggcatggatccgaaatttgcacgaccagattggatg
gtagtaactgttttacctgttccacctttatcggtcagaccagcagttattatgtatggt
tctgccaaaaatcaagatgacttaacacataagcttgccgatattataaaagcaaataat
gaattaatcagaaatgagcaagcgggagcagcagcgcacgtgatttcggagaatataaaa
atgttacaatttcacgtagcaacattagttgataacgatatgcctggcatgccacgagct
atgcagaaatcaggcaaacctttaaaagctataaaagcgagattaaaaggaaaggaaggg
agaataagaggaaatttgatgggtaaacgtgttgacttctctgctcggactgttattact
cctgatccaaatttacgaattgatcaggtcggtgtacctcggagtattgctcagaattta
acattccccgaaattgtcacaccttttaatatcgataaaatgcaagaactcgttagacgt
ggaaattcacaatatccaggtgctaagtacatcgtcagagataacggggaaagaatcgat
ttaaggttccacccaaaaccatccgatttacatttacaatgcgggtacagagtggaacgt
cacattcgggatggtgacctagtaattttcaatcggcaaccaacactacacaagatgagt
atgatgggtcatagggtaaaagtgttgccatggagtacattccgtatgaatcttagttgc
acgtctccttataatgccgattttgacggcgacgagatgaatttacatgttcctcagtca
atggagactcgagcagaagtagaaaacattcatgtaacaccgcgtcaaattattactccc
caagctaataaaccagtcatgggtattgtacaggacacgcttactgctgtaagaaaaatg
actaaaagagacgttttcatcgaaaaggaacagatgatgaatatccttatgttcttaccc
agttggaatggcaaaatgcctcagccatgcatattaaaaccaaagcctctatggactggt
aaacaaatcttttccttgatcataccaggcaacgtgaatatgataaggactcacagtaca
cacccagatgaagaagacgatggcccatacaaatggatttcacctggtgataccaaagtc
atggtagaacacggagaacttgttatgggtatactctgtaagaagaccttgggtacatct
gctggatctttgcttcacatttgtatgttggaattaggacacgaggtttgcggacgattt
tatggaaatattcaaactgtaattaataattggttactactggaaggtcactcgatcggt
attggagacaccattgccgatccacagacttatttagaaattcaaaaagccattagaaaa
gctaaagaggacgtgatagaagtgattcaaaaagctcacaacatggaattggaacctact
cctggtaataccttgaggcaaactttcgaaaatcaagtaaacagaattttaaacgacgct
cgtgataagactggtggttctgctaagaaatctttgactgaatacaacaacctaaaggct
atggtagtgtcaggatcaaaaggatctaatattaatatctctcaggttattgcttgtgtc
ggtcagcaaaacgtagaaggaaaacgtattccgtttggttttcgcaaaagaacattgcca
cattttattaaagacgattatggtccagaatccagaggattcgttgaaaactcgtacctt
gccggtttgacgccatcggagttttatttccacgctatgggaggtcgtgagggtcttatc
gatactgctgtaaaaactgcagaaactggttacattcagcgtcgtttgataaaagctatg
gagtctgtaatggtacattatgacggtacagtaagaaactctgtgggtcaacttatccaa
ttgcgttatggtgaggatggtctatgcggtgaaaccgtcgaatttcagaatttgcctact
attaaattgagtaacaaagcatttgaaaagaagttcaagttcgatccaaccaatgaacgg
tatcttcgtcgtatctttaacgaagatatagttagagaaatgatgggatctggtgaagtc
atatccgaactagaaagagaatgggaacaattgaacaaggatcgtgctatacttagggaa
attttccctagcggagaatcaaaagttgtactgccttgtaatttacaaagaatgatttgg
aatgtacaaaagatttttcatataaataagcgtgcacctactgatcttagtcctatgagg
gtcatacagggtgtaaaggatcttttggataaatgtatcattgtggctggtgatgataga
ctcagcaaacaggctaatgaaaatgctacattgctattccagtgcttagtgagatctaca
ttgtgtacaaaatgtgtttctgaagaatttcgattatccagtgaagcctttgaatggctt
attggagaaattgaaaccagattccaacaagcacaggtatcacctggagaaatggtaggc
gctttagctgcacagtcacttggtgaacctgcaacccagatgacactgaacactttccat
tttgctggtgtatcgtcgaaaaatgtaacccttggtgtacctagattgaaggaaattata
aacatcagtaagaaaccaaaggctccgtcgttgaccgtatttttgacgggagctgcagca
agagatgccgagaaagcaaagaatgtactttgtcgattggaacacaccacactgaggaaa
gttacagcaaatactgcgatctattacgatccagatccacaaaataccgtaatagcggaa
gatcaagaattcgtcaacgtttactatgaaatgcctgattttgatccgaataaaatatca
ccatggttacttcgaattgagttggatcgcaagaggatgactgataagaagttaactatg
gaacaaattgcagaaaaaattaatgccggcttcggtgacgatttgaactgtatttttaac
gatgataacgctgagaaattagttctacgaattaggataatgaacagcgacgataacaag
ttccaagatagtgaggaagagacggtagataaaatggaggatgatatgttccttcgatgt
attgaagcgaatatgcttagcgacatgacattacagggtattgaagcaatagggaaagtg
tacatgcatttgcctcaaactgatgctaagaaacgtatagttattacagaaactggtgaa
ttcaaagcaatagcagaatggttattggaaacggacggtacgagtttgatgaaagtgttg
agtgaaagagatgtcgatccagttagaacatttagtaacgatatttgcgagatatttgaa
gtactgggcatagaggctgtgaggaaatcggtagagaaagaaatgaatgctgttttgcaa
ttttacggcctttatgtaaattatcgtcatcttgctttactttgtgatgtaatgactgct
aaaggacacttgatggctataactcgtcacggaattaacagacaagacacaggtgctctt
atgagatgttccttcgaagaaacagtagacgttctattagatgcagcatctcacgcggaa
gtagatccaatgagaggagtatctgaaaacatcatcatgggacaacttccacgtatagga
acaggatgtttcgatttgttactggatgctgagaaatgtaaagctggtattgaaatacca
atggcagtgggtgctggtgtaatgggaactgctggaatgttcttcggtagtgttgctacc
ccaagcatgagtcctcaaatgacaccttggatgggcgccacacctggttatggcgcttca
agtatgtcacctgcattgggtagtggcatgacaccaggaggagcatgcttctccccatct
ggagcatcagatgcgtcaggactatctcctgcatactctgcgtattcaccacaacctgga
agtccaggaagcccaggccctagcatgagtccatacccaatgtcaccagcaggtggcgct
tcaccaagttattcacctacctctcccgcctacttgccaacatcgccaagtataacaccg
tcgagtcccaactattcgcctacaagccctacttattcacccactagtccaaattactcg
ccaacgagtccaagctattcaccaacgagtccgagctattcaccaacgtcaccaagttat
tcaccaacaagtccaaattattcgccatcaccaggttattcaccgacgagtccaagttac
tcaccaactagtccaagttattcaccaacaagtccgagttactcgccaacaagttcaagc
tattcaccgacgagtccaagttactctccaacaagtccaagctattcaccaacgtcgcca
agctactcaccgagtccatcgtactcgccaacgtcaccaagttattcatcaaccagccca
agttactcaccaaccagtccaagctattcaccgagttcaccaaattatacgcctgcctcg
ccatcttattctccaacgagtccaagttattcgccaagttctccacaatattcatcagct
agtccaagctactctccgagtagtccaaaatattctccgacaagtccgtcgtattcgcct
acgtcgccgtcgtttgctggaacctctccacagtacacaccagcaagtccgacgtattct
ccaacgagtccaacttattccccaacgagcccatcatactcacccagttcaccgcaacac
acggcgtcaggaagcacgagatattcgcctagcagtccaaattattcccctactagtcca
acatattcgcccacgagtcctcaatattcaccgtcgagtactaaatactcgcctaccagc
ccaacgtatacaccaaccagtccaagttactcaccaacaagtccaacatattcgccacca
gtgccagggtattcgccaacgagtcccacgtattccccggcgtcaccagcctatgaaaca
gacgattaa
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integrated database retrieval system
