Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110156347
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Entry
110156347 CDS
T05002
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110156347 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpec03021
]
110156347 (polr1a)
Enzymes [BR:
bpec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110156347 (polr1a)
Transcription machinery [BR:
bpec03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
110156347 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
110156347
NCBI-ProteinID:
XP_020776213
LinkDB
All DBs
Position
Unknown
AA seq
1683 aa
AA seq
DB search
MMFGKEIPWRRLEGMSFGMFSAEEIRKLSVKLITNSRFLDNVGNVAPNSLYDLALGPADN
KEVCSTCCQDFNNCPGHFGHVELPLPVYNPLFFDKLYFLIRGSCLNCHLLTCPRAEIHLL
IQQLHLLDHGALQEVYQLEQILTQVVETNPKATGDDFERALKQFTDTVIQETLVNTKPIK
HVVHMKNTLINNFWKNHMRARPCPSCKSKFAVRREHNSKIIVSMPSAQTLDKTDDIMAGR
RSYLTASTAREHVIQLWEKEGFFLKRVFSGMDFGSNENGFKPDLFFLELLLIPPCRYRPI
NRLGDQMFTNGQTVNMQAVMRDCEIIRKLLALIAGKKIQEEVVPEQPEQEQMEPSDQSFI
MSLPGQTLPDKLYNIWIRLQSHVNIVFDSDMDKLMTEKYPGIKQILEKKDGLFRKHMMGK
RVDFAARSVICPDMYIGINEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPGAS
MVINEDGRKTILSPSNFSQREAVAKQLLTPCPGPHSMPMKIVNRHIKNGDVLLLNRQPTL
HRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVSTNQ
QYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFNRDQYTELVYRGLTDKQGRVKLLPPAIL
KPYPLWTGKQVVSTLLLNVIPKNAVPLNLVGKSKIPNKAWIKEPPRSWPGYKPETMCDSQ
VVIREGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLAKLFTAYLQLYRGFT
LGVEDILVKPGANKQRKKIIKQSLKIGTKALQAAFNLPSDVEQAEAQSRWQDSHLNPDQR
DFSLADHKFKEVANQINNDINKVCMPIGLHRSFPDNNLQLMVQSGAKGSTVNTMQISCLL
GQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGREGLV
DTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVIQFLYGEDGLDIPKTQFLQPRQ
FPFVEENYEVIKKSQGLDEVLSRLDPEAARQHFAAIQRWKNKQERANPRQGAFLVFSQKK
LAKLKESIEMNEILNGRDTPTLQLMEQWRSLDAQSRSKFGRKALRCPEPVLGLMRPDVSF
GSVSENFNDITEKYLSSRTDLSEHNKESLRHLLHYKWQRALCDPGEAVGLLAAQSIGEPS
TQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSNIKTPMMSVPVLGTRKAQKKAKVLRK
MLTRVCLAELLQKVDVVESLQIIGSYNKMRTFKVTFHFLSPECYQDDKLLTPSQILHYME
TRFFLLLADAIKKHSAKLASISVETRKATLRDKDNEGDGPGGSAALDEDDGEEQEQEIVD
DKENEGDADATDAKHKDKQEEEVDYDSDEEEVDEAEEPEEEDETQSKDEANEERKNPTAL
LVTRLKRQKRSKVKAAPEVMDEMRVNAVLISSSSIEGYRYDHVNELWCEVDLMLPVTKVH
FDLTSVISSLAKSAVVMETKGLTRCLLSEVTTKNGEKETVLNTEGINMHELFKYCDILDL
NRLYCNEVHAMAATYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPL
NRHAMQSNSSPLQQMTFETSFKFLKQATMLGARDELESPSACLVVGKVVKGGTGIFELKQ
PLQ
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgatgttcggaaaggagataccatggcggcgactggagggcatgtcatttgggatgttt
tctgcggaagaaattaggaagctgagtgtgaagctgatcacaaactccagatttcttgat
aatgtgggaaacgtggctccaaacagcctgtacgacctggctctgggtccagctgacaac
aaagaggtgtgctccacatgttgtcaggactttaacaattgtcctggtcactttggtcac
gtggagttgcctctgccggtctacaaccctctattcttcgataaactgtacttcctaatc
cgaggctcatgtctgaactgccaccttttgacctgtcctcgagctgagattcacctcctc
atccaacagcttcacctgctggaccacggggcactacaggaggtgtaccagctcgaacaa
atcctcacacaggttgtggagacaaatcccaaagccactggagacgattttgaacgagcc
ttaaaacagttcacagatacagtcatccaagagacactggtcaacaccaaaccgataaaa
catgtcgttcacatgaagaacactttgataaataacttctggaaaaatcacatgagagcc
aggccatgccccagctgcaagagcaaatttgcagtgcgtcgtgaacacaacagtaaaatc
atcgtcagcatgccctcagctcagactctcgacaaaacagacgacataatggctggacgg
aggtcttacttgacggcgagtacagcccgagaacatgtaattcaactgtgggagaaagaa
ggcttctttttgaagcgcgtgttttctggaatggactttgggtctaatgaaaacggcttt
aaaccagacctgttcttcttggagctgcttctcatccccccttgcaggtaccgtcctatt
aaccgactgggggatcagatgttcacgaatggacagactgtgaatatgcaggcggtgatg
agagactgtgaaattatcagaaaactgctggcattgatcgccggaaagaaaatacaagag
gaagtggtcccagagcagccggagcaggagcagatggagccttcagaccagtccttcatt
atgtctctcccgggtcaaactctcccagataaactgtacaacatatggatcagactccaa
agtcacgtcaacatcgtgtttgacagtgacatggacaaactcatgaccgagaagtaccca
gggatcaaacagatcctggagaaaaaggacggcctcttcaggaagcacatgatggggaaa
cgtgtggacttcgccgctcgatctgtcatctgtccggacatgtacatcggcattaatgag
atcggaatccccatggtttttgccactaaactgacctaccctcagcctgtgactccgtgg
aacgtaaaggaacttcgtcaggcggttttaaatggtccaaacgtgcacccaggggcctcc
atggtgatcaatgaagacggaagaaaaactattctatctccatcaaacttcagccagaga
gaggcagttgccaaacagctcctgacgccatgtcctgggcctcacagtatgcccatgaag
atcgtaaatcgtcacataaagaacggagatgtgctgttattaaaccgtcagcccaccctc
cacagaccgtccatccaggcccactgtgcacgtatcctgcctggggagaaggtcctgagg
ctgcactatgcaaactgtaaagcctataacgcagactttgacggagacgagatgaatgct
cacttccctcagagtgaactgggcagagctgaagcctacactctggtcagcaccaaccag
cagtacctcgtccccaaggatgggaagcctctggccggtctgatccaggaccacatggtg
tctgggactcggatgacgattcggggttgtttcttcaatagagatcagtacacagagctg
gtctacagaggactcactgataaacaggggagagtgaaactcctcccaccagctattctc
aaaccatacccgctttggactgggaaacaggtggtgtccacgctgctcctgaatgtcatc
ccaaagaacgcagttcctctgaatctggtcggaaaatccaagatcccgaataaagcctgg
atcaaggaaccacccaggtcctggcctggatacaaaccagagaccatgtgtgactcacag
gtggtgatccgtgagggggagttgttggttggagtcctggataaggcccactatggctct
tctgcctatggcctggtgcactgctgttatgagctctatggaggagagaccagcggaaaa
ctgctcagctgtttggccaaactcttcaccgcatatctacaactctacagaggattcacc
ctgggtgtggaggacattttggtgaagcctggtgccaacaaacaacgtaaaaagatcatt
aaacagtcactgaaaattgggaccaaagctctgcaggctgcctttaacctcccttctgac
gtggagcaggcagaggctcagagcaggtggcaggactcccacctgaatcccgaccagaga
gacttcagtttggcagaccacaagtttaaagaggttgccaaccagatcaacaatgatatc
aacaaggtctgtatgcccataggactccatagatctttccccgacaacaacctgcaactc
atggttcagtctggagccaaaggatccacagtcaacactatgcagatctcgtgtctgttg
ggtcagatcgagttggaggggcggcggcctcccctgatgccttcagggaaatttctgccg
tgttttcagccgtatgacccctcacctggagctggggggtttgtgtctggaaggttcctc
actggcatcaaaccacaggagttcttctttcactgtatggctgggagagagggactggtc
gacacggctgtgaaaacctccagatctggatatttacaaagatgtgtgatcaaacacctg
gagggtctggtggtgcagtatgacctcacagtgagagacagcgacggttctgtcattcag
tttctttacggagaagatggactggacatcccaaagactcagtttcttcaacccagacag
ttccccttcgtcgaggagaactatgaggtcataaagaaatcccagggtcttgatgaggtt
ctgtctcggcttgaccctgaagctgccagacaacactttgcagcgattcagagatggaaa
aacaagcaggaaagggccaatccgagacaaggtgcattcttggtgttctcacagaagaaa
ctggccaaactcaaagagtcaatagaaatgaatgaaatcctcaatggtcgagacactcca
actttacagttgatggagcagtggcgttccctggatgcacaaagcaggtccaagtttggg
agaaaggctttgcgatgtcctgagccggtgctgggtttaatgaggccggacgtaagcttt
ggatctgtgtctgaaaactttaatgacatcacagagaaatatctgagcagccgaacggac
ctgagtgaacacaacaaggaaagccttcgtcacctgttacattataaatggcagcgtgct
ctgtgtgaccccggggaggccgtggggctcctcgccgctcagtccattggggaaccctcc
actcagatgactctaaacacgttccactttgctggaagaggagagatgaacgtcacgctg
ggaatacctcgactgagggagatcctgatgattgccagctccaacataaagactcccatg
atgagtgtcccggtcctgggcaccagaaaagcccagaagaaagccaaagttctgaggaaa
atgctcacgcgtgtctgtttggctgagttgttgcagaaagtggatgttgtggagtcctta
caaatcattggttcttacaacaaaatgcgaaccttcaaagtcacctttcacttcctgtca
cctgagtgttaccaggacgataaacttttgaccccatcccagatcctgcactacatggaa
acaaggtttttccttcttctagctgatgccataaagaagcacagcgctaaactagcttct
atttccgtggaaacaagaaaagcaactctcagagacaaagacaatgaaggagatggacca
ggtggctctgcagctttggatgaggacgacggggaggagcaggagcaggagattgtggac
gacaaagaaaatgaaggagatgcagacgccacagacgccaaacacaaagacaaacaagaa
gaagaggttgactatgatagtgatgaagaggaggtagatgaggcagaggaacccgaagaa
gaagacgaaactcagtcaaaggatgaagcgaatgaagaaaggaagaaccccacagcactc
cttgtgaccagactgaagaggcagaaacgcagtaaagtcaaagctgctccggaggtcatg
gacgagatgagagtgaatgctgtgctgatctcgagttcttccatagaggggtacagatat
gaccatgtgaacgagctctggtgtgaggtggacctgatgttaccggtgaccaaggtgcac
tttgacctcaccagcgtcatctcatctctggccaaaagcgccgttgtcatggagacgaag
ggtctgacgcgctgcctcttgagtgaggtcaccacgaagaatggagagaaagagactgta
ctgaacacagagggaataaacatgcatgagctgttcaagtactgtgatatcctggacctg
aaccgtctttactgtaacgaggtccacgcgatggccgccacctacggcatcgaggtcgcc
ctgaaggtcattgagaaggagatcaaggatgtgtttgctgtctatggcattgaggtggac
cccaggcacctgtctctggtggcagattacatgtgttttgagggagtgtacaaacctctg
aacagacacgccatgcagtccaactcctcccctttgcagcagatgaccttcgaaaccagc
ttcaagttcctcaagcaggccaccatgctcggtgctcgtgatgaactggaatcaccatcc
gcttgcctcgtagttggaaaagttgtgaaaggaggaacaggaatctttgaactgaaacaa
cctcttcaatag
DBGET
integrated database retrieval system
