Bombus pyrosoma: 122573549
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Entry
122573549 CDS
T07776
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bpyo
Bombus pyrosoma
Pathway
bpyo03020
RNA polymerase
bpyo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpyo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122573549
09124 Replication and repair
03420 Nucleotide excision repair
122573549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpyo03021
]
122573549
03400 DNA repair and recombination proteins [BR:
bpyo03400
]
122573549
Enzymes [BR:
bpyo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122573549
Transcription machinery [BR:
bpyo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122573549
DNA repair and recombination proteins [BR:
bpyo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122573549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
122573549
NCBI-ProteinID:
XP_043595978
LinkDB
All DBs
Position
LG12:complement(8609342..8618202)
Genome browser
AA seq
1902 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSAERKPGHGGCGRYQ
PNLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAILRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFEVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGTAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPNYSPSPGYSPTSPSYSPTSPSYSPTSPSYSPTSSS
YSPTSPSYSPTSPSYSPTSPSYSPSPSYSPTSPSYSSTSPSYSPTSPSYSPSSPNYTPAS
PSYSPTSPSYSPSSPQYSSASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPTYS
PTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTS
PTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atggccacgtctgactccaaagcgcctctgcgaaccgtaaaaagggttcaattcggcatt
ctttcacccgatgaaatacgtcggatgtcggtcacagatggcggcattcgatttccagaa
actatggaaggtggtcgcccaaagcttggtggacttatggatcctagacaaggtgtcatt
gatagaaattctagatgtcagacatgtgctggtaatatgacagaatgtccaggacacttt
ggtcatatagatttagcaaaaccagtttttcatgttggttttataacaaagacaataaaa
attttgagatgtgtatgtttttattgttcaaaacttcttgtcagtccacacaatccaaaa
atcaaagaaattgttatgaaaactaaaggtcaaccacgaaaacgtcttacttttgtttat
gatttatgtaaaagtaaaaacatttgtgagggtggtgatgagatggatattaacaaagaa
aatcaagaacaacaatctgcagagagaaaacctggacatggtggatgtggtagatatcaa
ccaaatctccggagatctggattagatgttactgcagaatggacacacgtaaatgaagat
tcacaggaaaaaaagatggcactcactgcagaaagagcttgggaaattttaaagcacatt
acagatgaagagtcatttatccttggcatggatccgaaatttgcacgaccagattggatg
gtagtaactgttttgcctgttccacctttatcggtcagaccagcagttattatgtatggt
tctgccaagaatcaggatgacttaacacataagcttgctgatattataaaagcaaataat
gaattaatcagaaatgagcaagcgggagcagcagcgcacgtgatatcggaaaatataaaa
atgttacaatttcatgtagcaacgttagttgataacgatatgcctggcatgccacgagct
atgcagaaatcaggtaaacctctaaaagctataaaagcgagattgaaagggaaggaaggg
agaataagaggaaatttgatgggtaaacgtgttgacttttctgctcggactgttattact
cctgatccaaatttgcgaattgatcaggtcggtgtacctcggagtattgctcagaattta
acattccccgaaattgtcacaccttttaatattgataaaatgcaagaacttgttagacgt
ggaaactcacaatatccaggtgctaagtatatcgtcagagataacggggaaagaatcgat
ttaaggttccacccgaaaccatccgatttacatctacaatgcgggtacagagtggaacgt
cacattcgagatggtgatctagtaattttcaatcggcaaccaacactacacaagatgagt
atgatgggtcatagggtaaaagtgttgccatggagtacattccgcatgaatcttagttgc
acgtctccttataatgctgattttgacggcgacgagatgaatttacacgttcctcagtca
atggagactcgagcagaagtggaaaacattcatgtaacaccacgtcaaattattactccc
caagctaataaaccagtcatgggtattgtacaggatacgcttactgctgtaagaaaaatg
actaaaagagacgttttcatagaaaaggaacagatgatgaatatccttatgttcttaccc
agttggaatggcaaaatgcctcagccatgcatattaaaaccaaagcctctatggactggt
aaacaaatcttttccttgatcataccaggcaacgtgaatatgataagaactcacagtaca
catccagatgaagaagacgatggcccatacaaatggatttcacctggtgatacaaaagtc
atggtagaacacggagaacttgttatgggtatactctgtaagaagaccttgggtacatct
gctggatctttgcttcatatttgtatgttggaattaggacacgaagtttgcgggcgattt
tacggaaatattcaaactgtaattaataattggttattactggaaggtcactcgatcggt
attggagacactattgccgatccacagacttatttagaaattcaaaaagctattaggaaa
gctaaagaggacgtgatagaagtgatacaaaaagctcacaatatggaattggaacctact
cctggtaataccttgaggcaaactttcgaaaatcaagtaaacagaattttaaacgacgct
cgtgataagactggtggttctgctaagaaatctttgactgaatacaacaacctaaaggct
atggtagtatcaggatcaaaaggatctaatattaatatctctcaggttattgcttgtgtc
ggtcagcaaaacgtagaaggtaaacgtatcccgtttggttttcgcaaaagaacattgcca
cattttattaaggacgattatggtccagaatccagaggattcgttgaaaactcgtacctt
gctggtttgacgccatctgagttttatttccacgctatgggaggtcgtgagggtcttatc
gatactgccgtaaaaactgcagaaactggttacattcagcgtcgtttgataaaagctatg
gagtctgtaatggtacattatgatggcacagtcagaaactctgtgggtcaacttatccaa
ctgcgttatggcgaggatggtctatgcggtgaaaccgtcgaatttcagaatttgcctact
attaaattgagtaataaagcatttgaaaagaagttcaagttcgatccgaccaatgaacga
tatcttcgtcgtatctttaacgaagatatagttagagaaatgatgggatctggtgaagtt
atatccgaactagaaagagaatgggaacaattgaacaaggatcgtgctatacttagagaa
attttccctagtggagaatcaaaagttgtattgccttgtaatttacaaagaatgatttgg
aatgtacaaaagatctttcatataaataagcgtgcacctactgatcttagtcctatgagg
gtcatacagggtgtgaaggatcttttagataaatgtattattgtggctggtgatgataga
ctcagcaaacaagctaatgaaaatgccacattgttattccaatgcttagtgagatctaca
ttgtgtacaaaatgtgtttctgaagaatttcgattatccagtgaagcctttgaatggctt
attggagaaattgaaaccagattccaacaagcacaggtatcacctggagaaatggtaggc
gctttagctgcacagtcacttggtgaacctgcaacccagatgacactgaacactttccat
tttgctggtgtatcgtcgaaaaatgtaacccttggtgtacctagattgaaggaaattata
aacatcagtaagaaaccaaaggctccgtcgttgaccgtatttttgacgggagctgcagca
agagatgccgagaaagcaaagaatgtactttgtcgattggaacacaccacactgaggaaa
gttacagcaaatactgcgatctattacgatccagatccacaaaataccgtaatagcggaa
gaccaagaattcgtcaacgtttactatgaaatgcctgattttgatccgaataagatatca
ccatggttacttcgaattgagttggatcgcaagagaatgactgataagaagttaactatg
gaacaaattgcagaaaaaattaatgctggctttggtgacgatttgaactgtatttttaac
gatgataatgctgagaaattagttctacgaattagaataatgaacagcgacgataacaag
ttccaagatagtgaggaagagactgtagataaaatggaggatgatatgttccttcgatgt
attgaagcgaatatgcttagcgacatgacattacagggtatcgaagcaatagggaaagtg
tacatgcatttgcctcaaactgatgctaagaaacgtatagttatcacagaaactggcgaa
tttaaagcaatagcagaatggttattggaaacggacggtacgagtttgatgaaagtgttg
agtgaaagagatgtcgatccagttagaacatttagtaatgatatttgtgagatatttgaa
gtactgggtatagaggctgtgaggaaatcggtagagaaagaaatgaatgctgttttgcaa
ttttacggcctttacgtaaactatcgtcatcttgctttgctttgtgacgtaatgactgct
aaaggacacttgatggctataactcgtcacggaattaacagacaagacacaggtgctctt
atgagatgttccttcgaagaaacggtggacgttttattagatgcagcatctcacgcggaa
gtagatccaatgagaggagtgtctgaaaatattatcatgggacaacttccacgtatagga
acaggatgttttgatttattattggatgccgagaaatgtaaagctggtattgaaatacca
atggcagtgggtgctggtgtaatgggaactgctggaatgttcttcggcagtgttgctacc
ccaagcatgagtcctcaaatgacaccttggatgggcgccacacctggttatggcgcttca
agtatgtcacctgcattgggtagcggcatgacaccaggaggagcgtgcttctccccatct
ggagcatcagatgcatcaggactatctcctgcatactctgcatattcaccacaacctgga
agtccaggaagtccaggtcctagcatgagtccatacccaatgtcaccagcaggtggcgct
tcaccaagttattcacctacctctcccgcctacttgccaacatcgccaagtataacaccg
tcgagtcccaactattcgcctacaagccctacttattcacccactagtccaaattactcg
ccaacgagtccaagctattcaccaacgagtccgagctattcaccaacgtcaccaagttat
tcaccaacaagtccaaactactcgccatcaccaggttattcaccgacgagtccaagttac
tcaccaactagtccaagttattcaccaacaagtccgagttactcgccaacaagttcaagc
tattcaccgacgagtccaagttactctccaacaagtccaagctattcaccaacgtcgcca
agctactcaccgagtccatcgtactcaccaacgtcaccaagttattcatcaaccagtcca
agttactcaccaaccagtccaagctattcaccgagttcaccaaattatacgcctgcctcg
ccatcttattctccaacgagtccaagttattcgccaagttctccacaatattcatcagct
agtccaagctactctccgagtagtccaaaatattctccgacaagtccttcgtattcgcct
acgtcgccgtcgtttgctggaacctctccacagtacacaccagcaagtccgacgtattct
ccaacgagtccaacttactccccgacgagtccatcatactcacccagttcaccgcaacac
acggcgtcaggaagcacgagatattcgcctagcagtccaaattattcccctactagtcca
acatattcgcctacgagtcctcaatattcaccgtcgagtactaaatactcgcctaccagt
ccaacgtatacaccaaccagtccaagttactcaccaacgagtccaacatattcgccacca
gtgccagggtattcgccaacgagtcccacttattccccggcgtcaccagcctacgaaaca
gacgattaa
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integrated database retrieval system
