Brassica rapa (field mustard): 103843494
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Entry
103843494 CDS
T03449
Name
(RefSeq) prolycopene isomerase, chloroplastic isoform X1
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00906
Carotenoid biosynthesis
brp01100
Metabolic pathways
brp01110
Biosynthesis of secondary metabolites
Module
brp_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
103843494
Enzymes [BR:
brp01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
103843494
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Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_binding_2
FAD_oxidored
Thi4
GIDA
HI0933_like
GDI
Pyr_redox_2
GMC_oxred_N
Motif
Other DBs
NCBI-GeneID:
103843494
NCBI-ProteinID:
XP_009118478
UniProt:
M4ERW2
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Position
A09:43923466..43926988
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AA seq
589 aa
AA seq
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MNLCLHNPVTCADRSSSLFSALKTSNNKLGTSKFGFLKNRKKNHVVAVRSVSSTAVEERT
KRESGGGESKVYDAIVIGSGIGGLVAATQLAVKEAKVLVLEKYLIPGGSSGYYERDGYTF
DVGSSVMFGFSDKGNLNLITQALKAVGREMEVIPDPTTVHFHLPNDLSVQVHREYDEFVN
ELISKFPHEKEGILGFYGICWKIFNSLNSLELKSLEEPIYLFGQFFQKPLECLTLAYYLP
QNAGDIARKYIKDPQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHYGGINYPVGGVG
GIARSLAGGLVDQGSEILYKANVKSIILDDGKAVGVRLADGREFFAKTIISNATRWDTFG
KLLKGEKLPKEEENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWKNLEEPYG
SIFLSIPTILDPSLAPDGRHILHIFTTSSIEDWEGLTPKEYEAKKEEVAAGIIQRLEKKL
FPGLSSSITFKEVGTPRTHRRYLARDKGTYGPMPRGTPKGLLGMPFNTTAIDGLYCVGDS
CFPGQGVIAVAFSGVMCAHRVAADIGLERKSKVLDAGLLGLLGWLRTLA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaatctctgtctccacaatcccgtaacgtgtgctgatcgcagctcctccttgttctcc
gccttgaagacttcaaataacaagttgggtacttcaaagtttgggtttttaaagaatcgg
aagaagaatcatgtggttgcagtgagatctgtttcttccactgctgtagaagaaaggacg
aagagagaaagtggaggaggagagagtaaagtgtacgacgcaatcgtcatcgggtctggg
attggaggattagttgcggcgactcagctagctgttaaagaagctaaagttttagttttg
gagaagtatctgatccctggtgggagctccggttattacgaaagagatggatacacattc
gatgttggctcttctgtcatgtttggtttcagcgataaggggaatctaaacttgataact
caagcgttgaaagcagttggtcgtgagatggaggttatacctgatcccaccaccgttcat
ttccatcttcccaatgatctctctgttcaggttcatagagagtatgatgagttcgttaat
gagcttattagcaagtttccgcacgagaaggaagggattcttggattctatggcatctgc
tggaagatcttcaactcattgaactctttggaactgaagtcgcttgaagagcctatctac
ctttttggacagttctttcagaagccgcttgaatgcttgacactcgcttattacttgcct
caaaatgctggggatatagctcggaagtacataaaggatcctcagttactgtctttcatt
gacgcagagtgtttcattgtgagtacagtcaatgctttgcagacgccaatgatcaatgca
agtatggttttatgtgacaggcactatggagggattaactaccctgttggtggtgttggt
gggattgcaaggtctttagcaggaggactagttgatcaaggaagtgaaatactctacaaa
gctaatgtgaaaagcataattcttgatgatggaaaggctgtgggtgtaaggctagcagat
ggaagagagttcttcgctaaaacaataatttctaatgctacaagatgggatacgtttggg
aagctgttgaaaggagaaaagcttccaaaagaagaagaaaacttccagaaagtctatgtg
aaggctccatcgtttctctcaatccacatgggtgttaaagcagaggttctccctccagat
acagattgccatcatttcgtacttgaggatgattggaagaatctggaggagccttatggc
agtatcttcctcagcatcccaaccattcttgatccatccttggctccagatggtcgacat
atactccacatatttacaacttcttccattgaagattgggagggactcactccaaaagag
tatgaggctaaaaaagaagaggtggcagctggaatcatacagaggctagagaaaaaactg
tttcctgggctcagttcatctattacttttaaggaggtgggcacaccaagaacacacagg
cgatatcttgctagggataagggaacgtatggaccaatgccaagaggaacaccaaaaggt
ttactaggcatgccgtttaacacaactgctatagatggtttgtactgcgttggggatagt
tgttttcctggtcagggagttatagctgtggctttctcaggagtgatgtgtgctcatcgt
gtagctgctgacattgggcttgagagaaaatcaaaggtacttgatgctggtcttcttggt
ttacttggttggttaaggacactcgcatag
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