Brassica rapa (field mustard): 103861245
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Entry
103861245 CDS
T03449
Name
(RefSeq) DNA-directed RNA polymerase II subunit 2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03020
RNA polymerase
brp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103861245
09124 Replication and repair
03420 Nucleotide excision repair
103861245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103861245
03400 DNA repair and recombination proteins [BR:
brp03400
]
103861245
Enzymes [BR:
brp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103861245
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103861245
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103861245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
103861245
NCBI-ProteinID:
XP_009137207
LinkDB
All DBs
Position
A03:complement(25393662..25400177)
Genome browser
AA seq
1191 aa
AA seq
DB search
MEYNNEYEQEPTYIEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN
LTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTE
LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPP
STMFVRMLARASAKGGSSGQYIRCTLPYIKAEIPIIIVFRALGFVADKDILEHICYDFAD
NQMMELLRPSLEEAFVIQNQLVALDYIGKRGQPMGVGVSKEKRIKYARDILQKEMLPHVG
VGEFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT
RDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL
TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT
VGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRR
VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQRLLIKKKDIYALQQRESAEEDGW
HHLVAKGFIEYIDTEEEETTMISMTINDLVQARLRPDEAYSETYTHCEIHPSLILGVCAS
IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF
RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF
GRPDRASTMGMRHGSYEKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRD
HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ
EDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS
KALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR
QPAEGRSRDGGLRFGEMERDCMIAHGAANFLKERLFDQSDAYRVHVCETCGLIAIANLKK
NSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKGLKSAKGRK
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggagtataataacgaatacgagcaggaaccgacttacatcgaagacgacgacgatgag
gagatcacccaggaagacgcctgggcggttatctctgcctatttcgaggagaaaggtctc
gttcgccagcagctcgattccttcgatgagtttattcagaacactatgcaagagatcgtc
gatgagtctgcggatatcgagatccgtcctgagtctcagcacaatcctggccagcaatct
gatttcgccgagacaatctacaagattagttttggacagatttatctgagtaaacccatg
atgacggaatctgatggagagacggctaccttgttccccaaggctgcaaggttgagaaac
ctcacctactctgctcctttgtatgtcgatgttagtaagagagttataaagaaagggcat
gatggtgaggaagttacagagacgcaggattttaccaaagttttcattgggaaggttccc
atcatgctccggtctagttactgtaccttgtttcagaactctgagaaagatttgacagag
cttggagaatgtccttatgatcagggcggatactttattattaatggcagtgaaaaggtt
ctgattgcccaggagaagatgagtacgaaccatgtttatgttttcaagaagcgacagcca
aataagtatgcatatgttgctgaagtccgttccatggctgagaaccaaaataggcctccc
agcacaatgtttgtgcgtatgcttgctcgtgctagtgcgaaagggggttcatctggacag
tatattcggtgtactctaccatacatcaaagcagaaattcccattatcatagtgtttcgt
gccttaggatttgttgccgataaggacatattggaacatatttgctatgattttgccgac
aatcagatgatggagttgcttaggccttccttggaagaagctttcgttattcaaaatcag
ctggttgcactcgactatattgggaaacgtggtcaacccatgggcgtgggtgtaagcaag
gaaaagaggataaagtatgcaagagatatccttcagaaagaaatgcttcctcatgtagga
gttggggagttttgtgagacgaagaaagcttactattttgggtatatcatacaccggctg
ctgctttgtgcacttggccgaaggccagaagatgatagggatcattatggtaacaaaagg
ctggatcttgctggtcctttacttggagggctgtttagaatgcttttcagaaagctaacg
agggatgtgagatcttatgttcagaagtgcgttgacaatggaaaagaagtcaatcttcaa
tttgccattaaggcaaaaacaattacctctggcctgaaatattctcttgctactgggaac
tggggccaggcaaacgctgctggcacaagagctggagtttctcaggttttaaatcggtta
acatatgcttccactttgtcgcatttgaggcgtctcaattctcctattgggcgtgaagga
aaattggcgaaaccaagacaactgcacaactcacagtggggtatgatgtgccctgctgaa
acacctgaaggacaggcttgtggtctagtgaaaaatttggcgctcatggtctacattaca
gttgggtcagctgcttatcccatcttggaattcttggaagaatgggggactgagaatttt
gaggaaatctctccatcagtaataccccaagccacaaaaatctttgtcaatggaatgtgg
gttggagttcatcgagatcctgacatgttggtgaaaactttgagacgtttgagaagaagg
gttgatgttaacactgaagttggcgttgttagagatattcgtctgaaagagctccggatt
tacactgattatggtcgttgtagtcgtcccttgtttattgtggataaccagaggctgtta
ataaagaagaaagatatctatgctttgcaacaaagggaaagtgcagaagaagatggttgg
catcatctagttgcaaaggggtttatagaatacattgacacagaggaagaggagactact
atgatatccatgactattaatgatctggttcaagctagactccgtcccgatgaggcatat
tccgaaacttacacacattgtgagattcacccttctttgatattgggcgtttgtgcttcg
attataccatttcctgaccataatcagtcgccccgtaacacgtatcaatctgctatggga
aagcaagcgatgggaatatatgtcaccaattaccaatttcgcatggataccttagcctat
gttctctattaccctcaaaagcctctggtcaccacaagagctatggagcatcttcacttt
aggcaacttccagcaggaattaatgctattgttgccatttcttgctattctggatataat
caggaagattctgtcatcatgaatcagtcttcaatagatcgtggtttctttagatccttg
ttctttcggtcttacagagatgaggagaaaaaaatggggacgctagtcaaagaagacttt
gggcgcccagatagagcaagtacaatgggtatgcgacatggttcatatgagaagctggac
gatgatggtcttgcacctcctggtaccagagtttcaggtgaagatgtaatcattgggaaa
accactccaatatctcaagacgaggctcaaggtcaatcatcgcgatacactagacgtgat
cacagtataagcttgcgacatagtgaaaccggaatggttgatcaggtgttattgaccaca
aatgcagatggcttgaggttcgtgaaagtgagggtgagatcagttcgtattcctcagatt
ggagacaaatttagtagtagacacggtcagaagggaaccgttggcatgacgtacacacag
gaggacatgccttggacaattgaaggcgtcactcctgatatcatcgtgaacccgcatgct
attccgtctcggatgacaattggtcagcttatcgagtgcatcatgggaaaagtggcagct
cacatgggaaaagaaggagatgcgactccttttacagatgtcacggtggataacataagc
aaagcgctccataagtgtggctaccaaatgcgtggattcgagagaatgtacaatgggcac
acgggtagaccactcacagctatgatattccttggaccaacatactaccagaggttgaag
catatggtggatgacaagattcactcgcgtggacgaggtcctgtgcagatcttaacaaga
caaccagctgaagggcgatcacgtgacggtggtctgcgatttggagaaatggagcgtgac
tgcatgattgcacatggagctgcaaacttcttgaaagagaggctgtttgatcagagcgat
gcgtatagggtgcatgtgtgtgaaacctgtgggctcatcgccattgcaaatctgaagaag
aattcttttgaatgcagaggttgcaagaacaaaacagacattgttcaggttcacattcca
tatgcttgcaaactgctgtttcaagagcttatgtcaatggcgattgcaccaaggatgctt
accaaaggccttaaatcagccaaaggcaggaagtga
DBGET
integrated database retrieval system
